Gene : Bradi4g39880 B. distachyon v3.1
Defline:  (1 of 3) PTHR11638//PTHR11638:SF96 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  5137
Name:  ? Bradi4g39880 Secondary Identifier:  ? PAC:32786150
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g39880 0.5kb upstream 0.5kb upstream 6636 true Bd4: 44386455-44393090 Brachypodium distachyon
Bradi4g39880 0.5kb upstream 0.5kb upstream 500 false Bd4: 44386455-44386954 Brachypodium distachyon
Bradi4g39880 0.5kb downstream 0.5kb downstream 6636 true Bd4: 44386955-44393590 Brachypodium distachyon
Bradi4g39880 0.5kb downstream 0.5kb downstream 500 false Bd4: 44393091-44393590 Brachypodium distachyon
Bradi4g39880 1.0kb upstream 1.0kb upstream 7136 true Bd4: 44385955-44393090 Brachypodium distachyon
Bradi4g39880 1.0kb upstream 1.0kb upstream 1000 false Bd4: 44385955-44386954 Brachypodium distachyon
Bradi4g39880 1.0kb downstream 1.0kb downstream 7136 true Bd4: 44386955-44394090 Brachypodium distachyon
Bradi4g39880 1.0kb downstream 1.0kb downstream 1000 false Bd4: 44393091-44394090 Brachypodium distachyon
Bradi4g39880 2.0kb upstream 2.0kb upstream 8136 true Bd4: 44384955-44393090 Brachypodium distachyon
Bradi4g39880 2.0kb upstream 2.0kb upstream 2000 false Bd4: 44384955-44386954 Brachypodium distachyon
Bradi4g39880 2.0kb downstream 2.0kb downstream 8136 true Bd4: 44386955-44395090 Brachypodium distachyon
Bradi4g39880 2.0kb downstream 2.0kb downstream 2000 false Bd4: 44393091-44395090 Brachypodium distachyon
Bradi4g39880 5.0kb upstream 5.0kb upstream 11136 true Bd4: 44381955-44393090 Brachypodium distachyon
Bradi4g39880 5.0kb upstream 5.0kb upstream 5000 false Bd4: 44381955-44386954 Brachypodium distachyon
Bradi4g39880 5.0kb downstream 5.0kb downstream 11136 true Bd4: 44386955-44398090 Brachypodium distachyon
Bradi4g39880 5.0kb downstream 5.0kb downstream 5000 false Bd4: 44393091-44398090 Brachypodium distachyon
Bradi4g39880 10.0kb upstream 10.0kb upstream 16136 true Bd4: 44376955-44393090 Brachypodium distachyon
Bradi4g39880 10.0kb upstream 10.0kb upstream 10000 false Bd4: 44376955-44386954 Brachypodium distachyon
Bradi4g39880 10.0kb downstream 10.0kb downstream 16136 true Bd4: 44386955-44403090 Brachypodium distachyon
Bradi4g39880 10.0kb downstream 10.0kb downstream 10000 false Bd4: 44393091-44403090 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993252 5273 Angiosperm View MSA
124576442 5269 Grass View MSA
121263546 5274 Embryophyte View MSA
123302078 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 133.558     High  
cufflinks 295.656     High  
cufflinks 164.243     High  
cufflinks 217.572     High  
cufflinks 103.425     High  
cufflinks 249.914     High  
cufflinks 263.574     High  
cufflinks 130.059     High  
cufflinks 175.824     High  
cufflinks 66.155     High  
cufflinks 384.408     High High
cufflinks 234.593     High  
cufflinks 285.585     High  
cufflinks 310.399     High High
cufflinks 144.081     High  
cufflinks 216.749     High  
cufflinks 98.165     High  
cufflinks 11.899     High Low
cufflinks 196.044     High  
cufflinks 143.744     High  
cufflinks 39.092     High Low
cufflinks 115.619     High  
cufflinks 130.654     High  
cufflinks 163.632     High  
cufflinks 178.338     High  
cufflinks 127.815     High  
cufflinks 322.042     High High
cufflinks 114.005     High  
cufflinks 110.909     High  
cufflinks 63.656     High  

0 Strain