Gene : Bradi2g33230 B. distachyon v3.1
Defline:  (1 of 1) PTHR23163//PTHR23163:SF0 - RING FINGER PROTEIN-RELATED // E3 UBIQUITIN-PROTEIN LIGASE BRE1 Genomic Order:  3916
Name:  ? Bradi2g33230 Secondary Identifier:  ? PAC:32780081
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g33230 0.5kb upstream 0.5kb upstream 13015 true Bd2: 33019181-33032195 Brachypodium distachyon
Bradi2g33230 0.5kb upstream 0.5kb upstream 500 false Bd2: 33031696-33032195 Brachypodium distachyon
Bradi2g33230 0.5kb downstream 0.5kb downstream 13015 true Bd2: 33018681-33031695 Brachypodium distachyon
Bradi2g33230 0.5kb downstream 0.5kb downstream 500 false Bd2: 33018681-33019180 Brachypodium distachyon
Bradi2g33230 1.0kb upstream 1.0kb upstream 13515 true Bd2: 33019181-33032695 Brachypodium distachyon
Bradi2g33230 1.0kb upstream 1.0kb upstream 1000 false Bd2: 33031696-33032695 Brachypodium distachyon
Bradi2g33230 1.0kb downstream 1.0kb downstream 13515 true Bd2: 33018181-33031695 Brachypodium distachyon
Bradi2g33230 1.0kb downstream 1.0kb downstream 1000 false Bd2: 33018181-33019180 Brachypodium distachyon
Bradi2g33230 2.0kb upstream 2.0kb upstream 14515 true Bd2: 33019181-33033695 Brachypodium distachyon
Bradi2g33230 2.0kb upstream 2.0kb upstream 2000 false Bd2: 33031696-33033695 Brachypodium distachyon
Bradi2g33230 2.0kb downstream 2.0kb downstream 14515 true Bd2: 33017181-33031695 Brachypodium distachyon
Bradi2g33230 2.0kb downstream 2.0kb downstream 2000 false Bd2: 33017181-33019180 Brachypodium distachyon
Bradi2g33230 5.0kb upstream 5.0kb upstream 17515 true Bd2: 33019181-33036695 Brachypodium distachyon
Bradi2g33230 5.0kb upstream 5.0kb upstream 5000 false Bd2: 33031696-33036695 Brachypodium distachyon
Bradi2g33230 5.0kb downstream 5.0kb downstream 17515 true Bd2: 33014181-33031695 Brachypodium distachyon
Bradi2g33230 5.0kb downstream 5.0kb downstream 5000 false Bd2: 33014181-33019180 Brachypodium distachyon
Bradi2g33230 10.0kb upstream 10.0kb upstream 22515 true Bd2: 33019181-33041695 Brachypodium distachyon
Bradi2g33230 10.0kb upstream 10.0kb upstream 10000 false Bd2: 33031696-33041695 Brachypodium distachyon
Bradi2g33230 10.0kb downstream 10.0kb downstream 22515 true Bd2: 33009181-33031695 Brachypodium distachyon
Bradi2g33230 10.0kb downstream 10.0kb downstream 10000 false Bd2: 33009181-33019180 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578331 5269 Grass View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.694        
cufflinks 1.813        
cufflinks 1.919        
cufflinks 1.464        
cufflinks 0.851       Low
cufflinks 1.835        
cufflinks 1.545        
cufflinks 1.648        
cufflinks 1.899        
cufflinks 1.295        
cufflinks 2.525       High
cufflinks 2.007        
cufflinks 1.947        
cufflinks 2.086        
cufflinks 1.795        
cufflinks 1.973        
cufflinks 1.146        
cufflinks 1.799        
cufflinks 1.416        
cufflinks 0.937       Low
cufflinks 1.203        
cufflinks 2.277       High
cufflinks 1.707        
cufflinks 1.857        
cufflinks 1.63        
cufflinks 1.652        
cufflinks 2.179       High
cufflinks 1.709        
cufflinks 1.783        
cufflinks 1.499        

0 Strain