Gene : Bradi2g33300 B. distachyon v3.1
Defline:  (1 of 1) PTHR11735//PTHR11735:SF14 - O-SIALOGLYCOPROTEIN ENDOPEPTIDASE // TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED Genomic Order:  3927
Name:  ? Bradi2g33300 Secondary Identifier:  ? PAC:32774204
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY0-1587 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g33300 0.5kb upstream 0.5kb upstream 5326 true Bd2: 33134792-33140117 Brachypodium distachyon
Bradi2g33300 0.5kb upstream 0.5kb upstream 500 false Bd2: 33134792-33135291 Brachypodium distachyon
Bradi2g33300 0.5kb downstream 0.5kb downstream 5326 true Bd2: 33135292-33140617 Brachypodium distachyon
Bradi2g33300 0.5kb downstream 0.5kb downstream 500 false Bd2: 33140118-33140617 Brachypodium distachyon
Bradi2g33300 1.0kb upstream 1.0kb upstream 5826 true Bd2: 33134292-33140117 Brachypodium distachyon
Bradi2g33300 1.0kb upstream 1.0kb upstream 1000 false Bd2: 33134292-33135291 Brachypodium distachyon
Bradi2g33300 1.0kb downstream 1.0kb downstream 5826 true Bd2: 33135292-33141117 Brachypodium distachyon
Bradi2g33300 1.0kb downstream 1.0kb downstream 1000 false Bd2: 33140118-33141117 Brachypodium distachyon
Bradi2g33300 2.0kb upstream 2.0kb upstream 6826 true Bd2: 33133292-33140117 Brachypodium distachyon
Bradi2g33300 2.0kb upstream 2.0kb upstream 2000 false Bd2: 33133292-33135291 Brachypodium distachyon
Bradi2g33300 2.0kb downstream 2.0kb downstream 6826 true Bd2: 33135292-33142117 Brachypodium distachyon
Bradi2g33300 2.0kb downstream 2.0kb downstream 2000 false Bd2: 33140118-33142117 Brachypodium distachyon
Bradi2g33300 5.0kb upstream 5.0kb upstream 9826 true Bd2: 33130292-33140117 Brachypodium distachyon
Bradi2g33300 5.0kb upstream 5.0kb upstream 5000 false Bd2: 33130292-33135291 Brachypodium distachyon
Bradi2g33300 5.0kb downstream 5.0kb downstream 9826 true Bd2: 33135292-33145117 Brachypodium distachyon
Bradi2g33300 5.0kb downstream 5.0kb downstream 5000 false Bd2: 33140118-33145117 Brachypodium distachyon
Bradi2g33300 10.0kb upstream 10.0kb upstream 14826 true Bd2: 33125292-33140117 Brachypodium distachyon
Bradi2g33300 10.0kb upstream 10.0kb upstream 10000 false Bd2: 33125292-33135291 Brachypodium distachyon
Bradi2g33300 10.0kb downstream 10.0kb downstream 14826 true Bd2: 33135292-33150117 Brachypodium distachyon
Bradi2g33300 10.0kb downstream 10.0kb downstream 10000 false Bd2: 33140118-33150117 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579950 5269 Grass View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.429        
cufflinks 0.957       High
cufflinks 0.662        
cufflinks 0.89        
cufflinks 0.392       Low
cufflinks 0.802        
cufflinks 0.882        
cufflinks 0.779        
cufflinks 0.759        
cufflinks 0.333       Low
cufflinks 0.389       Low
cufflinks 0.568        
cufflinks 0.317       Low
cufflinks 0.336       Low
cufflinks 0.367       Low
cufflinks 0.648        
cufflinks 0.634        
cufflinks 1.201       High
cufflinks 0.682        
cufflinks 0.402        
cufflinks 0.905        
cufflinks 0.505        
cufflinks 0.687        
cufflinks 0.654        
cufflinks 0.818        
cufflinks 0.508        
cufflinks 0.364       Low
cufflinks 0.454        
cufflinks 0.5        
cufflinks 1.02       High

0 Strain