Gene : Bradi2g33580 B. distachyon v3.1
Defline:  (1 of 2) K09272 - structure-specific recognition protein 1 (SSRP1) Genomic Order:  3963
Name:  ? Bradi2g33580 Secondary Identifier:  ? PAC:32780659
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g33580 0.5kb upstream 0.5kb upstream 7214 true Bd2: 33469411-33476624 Brachypodium distachyon
Bradi2g33580 0.5kb upstream 0.5kb upstream 500 false Bd2: 33476125-33476624 Brachypodium distachyon
Bradi2g33580 0.5kb downstream 0.5kb downstream 7214 true Bd2: 33468911-33476124 Brachypodium distachyon
Bradi2g33580 0.5kb downstream 0.5kb downstream 500 false Bd2: 33468911-33469410 Brachypodium distachyon
Bradi2g33580 1.0kb upstream 1.0kb upstream 7714 true Bd2: 33469411-33477124 Brachypodium distachyon
Bradi2g33580 1.0kb upstream 1.0kb upstream 1000 false Bd2: 33476125-33477124 Brachypodium distachyon
Bradi2g33580 1.0kb downstream 1.0kb downstream 7714 true Bd2: 33468411-33476124 Brachypodium distachyon
Bradi2g33580 1.0kb downstream 1.0kb downstream 1000 false Bd2: 33468411-33469410 Brachypodium distachyon
Bradi2g33580 2.0kb upstream 2.0kb upstream 8714 true Bd2: 33469411-33478124 Brachypodium distachyon
Bradi2g33580 2.0kb upstream 2.0kb upstream 2000 false Bd2: 33476125-33478124 Brachypodium distachyon
Bradi2g33580 2.0kb downstream 2.0kb downstream 8714 true Bd2: 33467411-33476124 Brachypodium distachyon
Bradi2g33580 2.0kb downstream 2.0kb downstream 2000 false Bd2: 33467411-33469410 Brachypodium distachyon
Bradi2g33580 5.0kb upstream 5.0kb upstream 11714 true Bd2: 33469411-33481124 Brachypodium distachyon
Bradi2g33580 5.0kb upstream 5.0kb upstream 5000 false Bd2: 33476125-33481124 Brachypodium distachyon
Bradi2g33580 5.0kb downstream 5.0kb downstream 11714 true Bd2: 33464411-33476124 Brachypodium distachyon
Bradi2g33580 5.0kb downstream 5.0kb downstream 5000 false Bd2: 33464411-33469410 Brachypodium distachyon
Bradi2g33580 10.0kb upstream 10.0kb upstream 16714 true Bd2: 33469411-33486124 Brachypodium distachyon
Bradi2g33580 10.0kb upstream 10.0kb upstream 10000 false Bd2: 33476125-33486124 Brachypodium distachyon
Bradi2g33580 10.0kb downstream 10.0kb downstream 16714 true Bd2: 33459411-33476124 Brachypodium distachyon
Bradi2g33580 10.0kb downstream 10.0kb downstream 10000 false Bd2: 33459411-33469410 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586936 5269 Grass View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.856        
cufflinks 6.649        
cufflinks 6.438        
cufflinks 6.319        
cufflinks 5.453        
cufflinks 5.816        
cufflinks 5.771        
cufflinks 5.108        
cufflinks 5.63        
cufflinks 5.009        
cufflinks 4.945        
cufflinks 5.602        
cufflinks 3.406       Low
cufflinks 3.552       Low
cufflinks 4.855        
cufflinks 5.407        
cufflinks 5.577        
cufflinks 7.967       High
cufflinks 7.51       High
cufflinks 6.462        
cufflinks 5.265        
cufflinks 6.366        
cufflinks 5.28        
cufflinks 5.139        
cufflinks 5.846        
cufflinks 6.06        
cufflinks 4.214       Low
cufflinks 5.574        
cufflinks 5.172        
cufflinks 6.896        

0 Strain