Gene : Bradi4g08020 B. distachyon v3.1
Defline:  (1 of 1) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  1057
Name:  ? Bradi4g08020 Secondary Identifier:  ? PAC:32789191
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g08020 0.5kb upstream 0.5kb upstream 1718 true Bd4: 7007702-7009419 Brachypodium distachyon
Bradi4g08020 0.5kb upstream 0.5kb upstream 500 false Bd4: 7008920-7009419 Brachypodium distachyon
Bradi4g08020 0.5kb downstream 0.5kb downstream 1718 true Bd4: 7007202-7008919 Brachypodium distachyon
Bradi4g08020 0.5kb downstream 0.5kb downstream 500 false Bd4: 7007202-7007701 Brachypodium distachyon
Bradi4g08020 1.0kb upstream 1.0kb upstream 2218 true Bd4: 7007702-7009919 Brachypodium distachyon
Bradi4g08020 1.0kb upstream 1.0kb upstream 1000 false Bd4: 7008920-7009919 Brachypodium distachyon
Bradi4g08020 1.0kb downstream 1.0kb downstream 2218 true Bd4: 7006702-7008919 Brachypodium distachyon
Bradi4g08020 1.0kb downstream 1.0kb downstream 1000 false Bd4: 7006702-7007701 Brachypodium distachyon
Bradi4g08020 2.0kb upstream 2.0kb upstream 3218 true Bd4: 7007702-7010919 Brachypodium distachyon
Bradi4g08020 2.0kb upstream 2.0kb upstream 2000 false Bd4: 7008920-7010919 Brachypodium distachyon
Bradi4g08020 2.0kb downstream 2.0kb downstream 3218 true Bd4: 7005702-7008919 Brachypodium distachyon
Bradi4g08020 2.0kb downstream 2.0kb downstream 2000 false Bd4: 7005702-7007701 Brachypodium distachyon
Bradi4g08020 5.0kb upstream 5.0kb upstream 6218 true Bd4: 7007702-7013919 Brachypodium distachyon
Bradi4g08020 5.0kb upstream 5.0kb upstream 5000 false Bd4: 7008920-7013919 Brachypodium distachyon
Bradi4g08020 5.0kb downstream 5.0kb downstream 6218 true Bd4: 7002702-7008919 Brachypodium distachyon
Bradi4g08020 5.0kb downstream 5.0kb downstream 5000 false Bd4: 7002702-7007701 Brachypodium distachyon
Bradi4g08020 10.0kb upstream 10.0kb upstream 11218 true Bd4: 7007702-7018919 Brachypodium distachyon
Bradi4g08020 10.0kb upstream 10.0kb upstream 10000 false Bd4: 7008920-7018919 Brachypodium distachyon
Bradi4g08020 10.0kb downstream 10.0kb downstream 11218 true Bd4: 6997702-7008919 Brachypodium distachyon
Bradi4g08020 10.0kb downstream 10.0kb downstream 10000 false Bd4: 6997702-7007701 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
124570488 5269 Grass View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1044.063     High  
cufflinks 1263.233     High  
cufflinks 692.311     High  
cufflinks 1446.32     High  
cufflinks 1535.009     High  
cufflinks 2050.802     High  
cufflinks 1847.63     High  
cufflinks 1606.86     High  
cufflinks 1979.659     High  
cufflinks 2051.893     High  
cufflinks 1971.615     High  
cufflinks 1641.226     High  
cufflinks 2862.024     High  
cufflinks 2993.553     High  
cufflinks 1177.305     High  
cufflinks 1681.975     High  
cufflinks 1959.78     High  
cufflinks 16.388     High Low
cufflinks 1184.771     High  
cufflinks 863.059     High  
cufflinks 1362.503     High  
cufflinks 1038.667     High  
cufflinks 1872.61     High  
cufflinks 2361.842     High  
cufflinks 2760.158     High  
cufflinks 731.751     High  
cufflinks 2679.52     High  
cufflinks 988.407     High  
cufflinks 1143.26     High  
cufflinks 920.497     High  

0 Strain