Gene : Bradi4g08110 B. distachyon v3.1
Defline:  (1 of 2) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Genomic Order:  1074
Name:  ? Bradi4g08110 Secondary Identifier:  ? PAC:32789562
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g08110 0.5kb upstream 0.5kb upstream 4637 true Bd4: 7102269-7106905 Brachypodium distachyon
Bradi4g08110 0.5kb upstream 0.5kb upstream 500 false Bd4: 7102269-7102768 Brachypodium distachyon
Bradi4g08110 0.5kb downstream 0.5kb downstream 4637 true Bd4: 7102769-7107405 Brachypodium distachyon
Bradi4g08110 0.5kb downstream 0.5kb downstream 500 false Bd4: 7106906-7107405 Brachypodium distachyon
Bradi4g08110 1.0kb upstream 1.0kb upstream 5137 true Bd4: 7101769-7106905 Brachypodium distachyon
Bradi4g08110 1.0kb upstream 1.0kb upstream 1000 false Bd4: 7101769-7102768 Brachypodium distachyon
Bradi4g08110 1.0kb downstream 1.0kb downstream 5137 true Bd4: 7102769-7107905 Brachypodium distachyon
Bradi4g08110 1.0kb downstream 1.0kb downstream 1000 false Bd4: 7106906-7107905 Brachypodium distachyon
Bradi4g08110 2.0kb upstream 2.0kb upstream 6137 true Bd4: 7100769-7106905 Brachypodium distachyon
Bradi4g08110 2.0kb upstream 2.0kb upstream 2000 false Bd4: 7100769-7102768 Brachypodium distachyon
Bradi4g08110 2.0kb downstream 2.0kb downstream 6137 true Bd4: 7102769-7108905 Brachypodium distachyon
Bradi4g08110 2.0kb downstream 2.0kb downstream 2000 false Bd4: 7106906-7108905 Brachypodium distachyon
Bradi4g08110 5.0kb upstream 5.0kb upstream 9137 true Bd4: 7097769-7106905 Brachypodium distachyon
Bradi4g08110 5.0kb upstream 5.0kb upstream 5000 false Bd4: 7097769-7102768 Brachypodium distachyon
Bradi4g08110 5.0kb downstream 5.0kb downstream 9137 true Bd4: 7102769-7111905 Brachypodium distachyon
Bradi4g08110 5.0kb downstream 5.0kb downstream 5000 false Bd4: 7106906-7111905 Brachypodium distachyon
Bradi4g08110 10.0kb upstream 10.0kb upstream 14137 true Bd4: 7092769-7106905 Brachypodium distachyon
Bradi4g08110 10.0kb upstream 10.0kb upstream 10000 false Bd4: 7092769-7102768 Brachypodium distachyon
Bradi4g08110 10.0kb downstream 10.0kb downstream 14137 true Bd4: 7102769-7116905 Brachypodium distachyon
Bradi4g08110 10.0kb downstream 10.0kb downstream 10000 false Bd4: 7106906-7116905 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581421 5269 Grass View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.749        
cufflinks 5.798        
cufflinks 5.889        
cufflinks 4.927        
cufflinks 3.825        
cufflinks 5.625        
cufflinks 5.22        
cufflinks 5.79        
cufflinks 5.283        
cufflinks 4.728        
cufflinks 7.168       High
cufflinks 6.884        
cufflinks 6.105        
cufflinks 6.18        
cufflinks 5.414        
cufflinks 6.416        
cufflinks 4.623        
cufflinks 6.456        
cufflinks 3.47       Low
cufflinks 2.17       Low
cufflinks 4.987        
cufflinks 6.595        
cufflinks 5.481        
cufflinks 5.478        
cufflinks 5.198        
cufflinks 5.549        
cufflinks 8.0       High
cufflinks 5.304        
cufflinks 5.312        
cufflinks 5.816        

0 Strain