Gene : Bradi2g39487 B. distachyon v3.1
Defline:  (1 of 399) PF01535 - PPR repeat (PPR) Genomic Order:  4729
Name:  ? Bradi2g39487 Secondary Identifier:  ? PAC:32776682
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g39487 0.5kb upstream 0.5kb upstream 3151 true Bd2: 39298829-39301979 Brachypodium distachyon
Bradi2g39487 0.5kb upstream 0.5kb upstream 500 false Bd2: 39298829-39299328 Brachypodium distachyon
Bradi2g39487 0.5kb downstream 0.5kb downstream 3151 true Bd2: 39299329-39302479 Brachypodium distachyon
Bradi2g39487 0.5kb downstream 0.5kb downstream 500 false Bd2: 39301980-39302479 Brachypodium distachyon
Bradi2g39487 1.0kb upstream 1.0kb upstream 3651 true Bd2: 39298329-39301979 Brachypodium distachyon
Bradi2g39487 1.0kb upstream 1.0kb upstream 1000 false Bd2: 39298329-39299328 Brachypodium distachyon
Bradi2g39487 1.0kb downstream 1.0kb downstream 3651 true Bd2: 39299329-39302979 Brachypodium distachyon
Bradi2g39487 1.0kb downstream 1.0kb downstream 1000 false Bd2: 39301980-39302979 Brachypodium distachyon
Bradi2g39487 2.0kb upstream 2.0kb upstream 4651 true Bd2: 39297329-39301979 Brachypodium distachyon
Bradi2g39487 2.0kb upstream 2.0kb upstream 2000 false Bd2: 39297329-39299328 Brachypodium distachyon
Bradi2g39487 2.0kb downstream 2.0kb downstream 4651 true Bd2: 39299329-39303979 Brachypodium distachyon
Bradi2g39487 2.0kb downstream 2.0kb downstream 2000 false Bd2: 39301980-39303979 Brachypodium distachyon
Bradi2g39487 5.0kb upstream 5.0kb upstream 7651 true Bd2: 39294329-39301979 Brachypodium distachyon
Bradi2g39487 5.0kb upstream 5.0kb upstream 5000 false Bd2: 39294329-39299328 Brachypodium distachyon
Bradi2g39487 5.0kb downstream 5.0kb downstream 7651 true Bd2: 39299329-39306979 Brachypodium distachyon
Bradi2g39487 5.0kb downstream 5.0kb downstream 5000 false Bd2: 39301980-39306979 Brachypodium distachyon
Bradi2g39487 10.0kb upstream 10.0kb upstream 12651 true Bd2: 39289329-39301979 Brachypodium distachyon
Bradi2g39487 10.0kb upstream 10.0kb upstream 10000 false Bd2: 39289329-39299328 Brachypodium distachyon
Bradi2g39487 10.0kb downstream 10.0kb downstream 12651 true Bd2: 39299329-39311979 Brachypodium distachyon
Bradi2g39487 10.0kb downstream 10.0kb downstream 10000 false Bd2: 39301980-39311979 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570413 5269 Grass View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.276        
cufflinks 0.702        
cufflinks 0.591        
cufflinks 0.554        
cufflinks 0.22       Low
cufflinks 0.422        
cufflinks 0.71        
cufflinks 0.494        
cufflinks 0.618        
cufflinks 0.386        
cufflinks 0.372        
cufflinks 0.54        
cufflinks 0.27       Low
cufflinks 0.306        
cufflinks 0.249       Low
cufflinks 0.687        
cufflinks 0.876       High
cufflinks 0.932       High
cufflinks 0.728        
cufflinks 0.396        
cufflinks 0.674        
cufflinks 0.564        
cufflinks 0.434        
cufflinks 0.464        
cufflinks 0.578        
cufflinks 0.532        
cufflinks 0.346        
cufflinks 0.506        
cufflinks 0.361        
cufflinks 0.918       High

0 Strain