Gene : Bradi2g40537 B. distachyon v3.1
Defline:  (1 of 1) PTHR10791//PTHR10791:SF23 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  4841
Name:  ? Bradi2g40537 Secondary Identifier:  ? PAC:32775627
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g40537 0.5kb upstream 0.5kb upstream 3758 true Bd2: 40525112-40528869 Brachypodium distachyon
Bradi2g40537 0.5kb upstream 0.5kb upstream 500 false Bd2: 40525112-40525611 Brachypodium distachyon
Bradi2g40537 0.5kb downstream 0.5kb downstream 3758 true Bd2: 40525612-40529369 Brachypodium distachyon
Bradi2g40537 0.5kb downstream 0.5kb downstream 500 false Bd2: 40528870-40529369 Brachypodium distachyon
Bradi2g40537 1.0kb upstream 1.0kb upstream 4258 true Bd2: 40524612-40528869 Brachypodium distachyon
Bradi2g40537 1.0kb upstream 1.0kb upstream 1000 false Bd2: 40524612-40525611 Brachypodium distachyon
Bradi2g40537 1.0kb downstream 1.0kb downstream 4258 true Bd2: 40525612-40529869 Brachypodium distachyon
Bradi2g40537 1.0kb downstream 1.0kb downstream 1000 false Bd2: 40528870-40529869 Brachypodium distachyon
Bradi2g40537 2.0kb upstream 2.0kb upstream 5258 true Bd2: 40523612-40528869 Brachypodium distachyon
Bradi2g40537 2.0kb upstream 2.0kb upstream 2000 false Bd2: 40523612-40525611 Brachypodium distachyon
Bradi2g40537 2.0kb downstream 2.0kb downstream 5258 true Bd2: 40525612-40530869 Brachypodium distachyon
Bradi2g40537 2.0kb downstream 2.0kb downstream 2000 false Bd2: 40528870-40530869 Brachypodium distachyon
Bradi2g40537 5.0kb upstream 5.0kb upstream 8258 true Bd2: 40520612-40528869 Brachypodium distachyon
Bradi2g40537 5.0kb upstream 5.0kb upstream 5000 false Bd2: 40520612-40525611 Brachypodium distachyon
Bradi2g40537 5.0kb downstream 5.0kb downstream 8258 true Bd2: 40525612-40533869 Brachypodium distachyon
Bradi2g40537 5.0kb downstream 5.0kb downstream 5000 false Bd2: 40528870-40533869 Brachypodium distachyon
Bradi2g40537 10.0kb upstream 10.0kb upstream 13258 true Bd2: 40515612-40528869 Brachypodium distachyon
Bradi2g40537 10.0kb upstream 10.0kb upstream 10000 false Bd2: 40515612-40525611 Brachypodium distachyon
Bradi2g40537 10.0kb downstream 10.0kb downstream 13258 true Bd2: 40525612-40538869 Brachypodium distachyon
Bradi2g40537 10.0kb downstream 10.0kb downstream 10000 false Bd2: 40528870-40538869 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576748 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.037        
cufflinks 2.533        
cufflinks 7.814        
cufflinks 3.326        
cufflinks 20.837     High High
cufflinks 1.507       Low
cufflinks 1.89       Low
cufflinks 2.551        
cufflinks 1.384       Low
cufflinks 8.207        
cufflinks 8.229        
cufflinks 4.091        
cufflinks 3.254        
cufflinks 3.525        
cufflinks 9.155     High  
cufflinks 3.13        
cufflinks 3.314        
cufflinks 15.948     High High
cufflinks 9.199        
cufflinks 20.02     High High
cufflinks 3.25        
cufflinks 7.719        
cufflinks 2.235       Low
cufflinks 1.438       Low
cufflinks 1.238       Low
cufflinks 10.378        
cufflinks 3.202        
cufflinks 9.721        
cufflinks 7.665        
cufflinks 5.26        

0 Strain