Gene : Bradi2g40890 B. distachyon v3.1
Defline:  (1 of 2) K02151 - V-type H+-transporting ATPase subunit F (ATPeV1F, ATP6S14) Genomic Order:  4879
Name:  ? Bradi2g40890 Secondary Identifier:  ? PAC:32780596
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7219 Brachypodium distachyon pathologic  
Bdistachyon PWY-7229 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g40890 0.5kb upstream 0.5kb upstream 3659 true Bd2: 40957678-40961336 Brachypodium distachyon
Bradi2g40890 0.5kb upstream 0.5kb upstream 500 false Bd2: 40960837-40961336 Brachypodium distachyon
Bradi2g40890 0.5kb downstream 0.5kb downstream 3659 true Bd2: 40957178-40960836 Brachypodium distachyon
Bradi2g40890 0.5kb downstream 0.5kb downstream 500 false Bd2: 40957178-40957677 Brachypodium distachyon
Bradi2g40890 1.0kb upstream 1.0kb upstream 4159 true Bd2: 40957678-40961836 Brachypodium distachyon
Bradi2g40890 1.0kb upstream 1.0kb upstream 1000 false Bd2: 40960837-40961836 Brachypodium distachyon
Bradi2g40890 1.0kb downstream 1.0kb downstream 4159 true Bd2: 40956678-40960836 Brachypodium distachyon
Bradi2g40890 1.0kb downstream 1.0kb downstream 1000 false Bd2: 40956678-40957677 Brachypodium distachyon
Bradi2g40890 2.0kb upstream 2.0kb upstream 5159 true Bd2: 40957678-40962836 Brachypodium distachyon
Bradi2g40890 2.0kb upstream 2.0kb upstream 2000 false Bd2: 40960837-40962836 Brachypodium distachyon
Bradi2g40890 2.0kb downstream 2.0kb downstream 5159 true Bd2: 40955678-40960836 Brachypodium distachyon
Bradi2g40890 2.0kb downstream 2.0kb downstream 2000 false Bd2: 40955678-40957677 Brachypodium distachyon
Bradi2g40890 5.0kb upstream 5.0kb upstream 8159 true Bd2: 40957678-40965836 Brachypodium distachyon
Bradi2g40890 5.0kb upstream 5.0kb upstream 5000 false Bd2: 40960837-40965836 Brachypodium distachyon
Bradi2g40890 5.0kb downstream 5.0kb downstream 8159 true Bd2: 40952678-40960836 Brachypodium distachyon
Bradi2g40890 5.0kb downstream 5.0kb downstream 5000 false Bd2: 40952678-40957677 Brachypodium distachyon
Bradi2g40890 10.0kb upstream 10.0kb upstream 13159 true Bd2: 40957678-40970836 Brachypodium distachyon
Bradi2g40890 10.0kb upstream 10.0kb upstream 10000 false Bd2: 40960837-40970836 Brachypodium distachyon
Bradi2g40890 10.0kb downstream 10.0kb downstream 13159 true Bd2: 40947678-40960836 Brachypodium distachyon
Bradi2g40890 10.0kb downstream 10.0kb downstream 10000 false Bd2: 40947678-40957677 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583710 5269 Grass View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.556     High  
cufflinks 15.688     High  
cufflinks 17.989     High  
cufflinks 24.025     High  
cufflinks 34.251     High  
cufflinks 14.699     High  
cufflinks 14.867     High  
cufflinks 14.604     High  
cufflinks 15.135     High  
cufflinks 31.54     High  
cufflinks 13.58     High Low
cufflinks 14.606     High  
cufflinks 13.837     High Low
cufflinks 13.771     High Low
cufflinks 24.326     High  
cufflinks 13.624     High Low
cufflinks 35.757     High High
cufflinks 25.097     High  
cufflinks 52.518     High High
cufflinks 74.396     High High
cufflinks 35.271     High High
cufflinks 16.841     High  
cufflinks 15.849     High  
cufflinks 16.752     High  
cufflinks 18.094     High  
cufflinks 30.299     High  
cufflinks 16.188     High  
cufflinks 25.26     High  
cufflinks 21.739     High  
cufflinks 24.798     High  

0 Strain