Gene : Bradi2g37460 B. distachyon v3.1
Defline:  (1 of 1) PTHR22600//PTHR22600:SF16 - BETA-HEXOSAMINIDASE // BETA-HEXOSAMINIDASE 1 Genomic Order:  4449
Name:  ? Bradi2g37460 Secondary Identifier:  ? PAC:32782158
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6902 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g37460 0.5kb upstream 0.5kb upstream 6748 true Bd2: 37533945-37540692 Brachypodium distachyon
Bradi2g37460 0.5kb upstream 0.5kb upstream 500 false Bd2: 37540193-37540692 Brachypodium distachyon
Bradi2g37460 0.5kb downstream 0.5kb downstream 6748 true Bd2: 37533445-37540192 Brachypodium distachyon
Bradi2g37460 0.5kb downstream 0.5kb downstream 500 false Bd2: 37533445-37533944 Brachypodium distachyon
Bradi2g37460 1.0kb upstream 1.0kb upstream 7248 true Bd2: 37533945-37541192 Brachypodium distachyon
Bradi2g37460 1.0kb upstream 1.0kb upstream 1000 false Bd2: 37540193-37541192 Brachypodium distachyon
Bradi2g37460 1.0kb downstream 1.0kb downstream 7248 true Bd2: 37532945-37540192 Brachypodium distachyon
Bradi2g37460 1.0kb downstream 1.0kb downstream 1000 false Bd2: 37532945-37533944 Brachypodium distachyon
Bradi2g37460 2.0kb upstream 2.0kb upstream 8248 true Bd2: 37533945-37542192 Brachypodium distachyon
Bradi2g37460 2.0kb upstream 2.0kb upstream 2000 false Bd2: 37540193-37542192 Brachypodium distachyon
Bradi2g37460 2.0kb downstream 2.0kb downstream 8248 true Bd2: 37531945-37540192 Brachypodium distachyon
Bradi2g37460 2.0kb downstream 2.0kb downstream 2000 false Bd2: 37531945-37533944 Brachypodium distachyon
Bradi2g37460 5.0kb upstream 5.0kb upstream 11248 true Bd2: 37533945-37545192 Brachypodium distachyon
Bradi2g37460 5.0kb upstream 5.0kb upstream 5000 false Bd2: 37540193-37545192 Brachypodium distachyon
Bradi2g37460 5.0kb downstream 5.0kb downstream 11248 true Bd2: 37528945-37540192 Brachypodium distachyon
Bradi2g37460 5.0kb downstream 5.0kb downstream 5000 false Bd2: 37528945-37533944 Brachypodium distachyon
Bradi2g37460 10.0kb upstream 10.0kb upstream 16248 true Bd2: 37533945-37550192 Brachypodium distachyon
Bradi2g37460 10.0kb upstream 10.0kb upstream 10000 false Bd2: 37540193-37550192 Brachypodium distachyon
Bradi2g37460 10.0kb downstream 10.0kb downstream 16248 true Bd2: 37523945-37540192 Brachypodium distachyon
Bradi2g37460 10.0kb downstream 10.0kb downstream 10000 false Bd2: 37523945-37533944 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574726 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.042        
cufflinks 9.496        
cufflinks 9.092        
cufflinks 5.371        
cufflinks 1.278       Low
cufflinks 7.503        
cufflinks 9.643     High  
cufflinks 2.513       Low
cufflinks 3.775        
cufflinks 2.63       Low
cufflinks 5.139        
cufflinks 5.068        
cufflinks 4.847        
cufflinks 3.6        
cufflinks 2.471       Low
cufflinks 7.444        
cufflinks 4.733        
cufflinks 15.889     High High
cufflinks 11.886       High
cufflinks 1.655       Low
cufflinks 7.228        
cufflinks 3.862        
cufflinks 2.392       Low
cufflinks 3.399        
cufflinks 5.122        
cufflinks 7.416        
cufflinks 9.823     High  
cufflinks 7.284        
cufflinks 5.187        
cufflinks 7.614        

0 Strain