Gene : Bradi2g43210 B. distachyon v3.1
Defline:  (1 of 1) PTHR12121//PTHR12121:SF48 - CARBON CATABOLITE REPRESSOR PROTEIN 4 // CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 Genomic Order:  5185
Name:  ? Bradi2g43210 Secondary Identifier:  ? PAC:32774652
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g43210 0.5kb upstream 0.5kb upstream 7826 true Bd2: 43469387-43477212 Brachypodium distachyon
Bradi2g43210 0.5kb upstream 0.5kb upstream 500 false Bd2: 43476713-43477212 Brachypodium distachyon
Bradi2g43210 0.5kb downstream 0.5kb downstream 7826 true Bd2: 43468887-43476712 Brachypodium distachyon
Bradi2g43210 0.5kb downstream 0.5kb downstream 500 false Bd2: 43468887-43469386 Brachypodium distachyon
Bradi2g43210 1.0kb upstream 1.0kb upstream 8326 true Bd2: 43469387-43477712 Brachypodium distachyon
Bradi2g43210 1.0kb upstream 1.0kb upstream 1000 false Bd2: 43476713-43477712 Brachypodium distachyon
Bradi2g43210 1.0kb downstream 1.0kb downstream 8326 true Bd2: 43468387-43476712 Brachypodium distachyon
Bradi2g43210 1.0kb downstream 1.0kb downstream 1000 false Bd2: 43468387-43469386 Brachypodium distachyon
Bradi2g43210 2.0kb upstream 2.0kb upstream 9326 true Bd2: 43469387-43478712 Brachypodium distachyon
Bradi2g43210 2.0kb upstream 2.0kb upstream 2000 false Bd2: 43476713-43478712 Brachypodium distachyon
Bradi2g43210 2.0kb downstream 2.0kb downstream 9326 true Bd2: 43467387-43476712 Brachypodium distachyon
Bradi2g43210 2.0kb downstream 2.0kb downstream 2000 false Bd2: 43467387-43469386 Brachypodium distachyon
Bradi2g43210 5.0kb upstream 5.0kb upstream 12326 true Bd2: 43469387-43481712 Brachypodium distachyon
Bradi2g43210 5.0kb upstream 5.0kb upstream 5000 false Bd2: 43476713-43481712 Brachypodium distachyon
Bradi2g43210 5.0kb downstream 5.0kb downstream 12326 true Bd2: 43464387-43476712 Brachypodium distachyon
Bradi2g43210 5.0kb downstream 5.0kb downstream 5000 false Bd2: 43464387-43469386 Brachypodium distachyon
Bradi2g43210 10.0kb upstream 10.0kb upstream 17326 true Bd2: 43469387-43486712 Brachypodium distachyon
Bradi2g43210 10.0kb upstream 10.0kb upstream 10000 false Bd2: 43476713-43486712 Brachypodium distachyon
Bradi2g43210 10.0kb downstream 10.0kb downstream 17326 true Bd2: 43459387-43476712 Brachypodium distachyon
Bradi2g43210 10.0kb downstream 10.0kb downstream 10000 false Bd2: 43459387-43469386 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573185 5269 Grass View MSA
122041541 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.757        
cufflinks 1.316        
cufflinks 1.048        
cufflinks 0.966        
cufflinks 0.349       Low
cufflinks 1.239        
cufflinks 1.128        
cufflinks 0.795        
cufflinks 0.991        
cufflinks 0.541        
cufflinks 0.935        
cufflinks 1.048        
cufflinks 0.855        
cufflinks 0.809        
cufflinks 0.5        
cufflinks 1.309        
cufflinks 0.61        
cufflinks 1.416       High
cufflinks 0.679        
cufflinks 0.216       Low
cufflinks 0.789        
cufflinks 0.958        
cufflinks 0.796        
cufflinks 1.022        
cufflinks 1.066        
cufflinks 0.958        
cufflinks 1.43       High
cufflinks 0.811        
cufflinks 0.77        
cufflinks 1.19        

0 Strain