Gene : Bradi2g43310 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.204 - tRNA (cytosine(38)-C(5))-methyltransferase Genomic Order:  5197
Name:  ? Bradi2g43310 Secondary Identifier:  ? PAC:32772773
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g43310 0.5kb upstream 0.5kb upstream 4056 true Bd2: 43551884-43555939 Brachypodium distachyon
Bradi2g43310 0.5kb upstream 0.5kb upstream 500 false Bd2: 43555440-43555939 Brachypodium distachyon
Bradi2g43310 0.5kb downstream 0.5kb downstream 4056 true Bd2: 43551384-43555439 Brachypodium distachyon
Bradi2g43310 0.5kb downstream 0.5kb downstream 500 false Bd2: 43551384-43551883 Brachypodium distachyon
Bradi2g43310 1.0kb upstream 1.0kb upstream 4556 true Bd2: 43551884-43556439 Brachypodium distachyon
Bradi2g43310 1.0kb upstream 1.0kb upstream 1000 false Bd2: 43555440-43556439 Brachypodium distachyon
Bradi2g43310 1.0kb downstream 1.0kb downstream 4556 true Bd2: 43550884-43555439 Brachypodium distachyon
Bradi2g43310 1.0kb downstream 1.0kb downstream 1000 false Bd2: 43550884-43551883 Brachypodium distachyon
Bradi2g43310 2.0kb upstream 2.0kb upstream 5556 true Bd2: 43551884-43557439 Brachypodium distachyon
Bradi2g43310 2.0kb upstream 2.0kb upstream 2000 false Bd2: 43555440-43557439 Brachypodium distachyon
Bradi2g43310 2.0kb downstream 2.0kb downstream 5556 true Bd2: 43549884-43555439 Brachypodium distachyon
Bradi2g43310 2.0kb downstream 2.0kb downstream 2000 false Bd2: 43549884-43551883 Brachypodium distachyon
Bradi2g43310 5.0kb upstream 5.0kb upstream 8556 true Bd2: 43551884-43560439 Brachypodium distachyon
Bradi2g43310 5.0kb upstream 5.0kb upstream 5000 false Bd2: 43555440-43560439 Brachypodium distachyon
Bradi2g43310 5.0kb downstream 5.0kb downstream 8556 true Bd2: 43546884-43555439 Brachypodium distachyon
Bradi2g43310 5.0kb downstream 5.0kb downstream 5000 false Bd2: 43546884-43551883 Brachypodium distachyon
Bradi2g43310 10.0kb upstream 10.0kb upstream 13556 true Bd2: 43551884-43565439 Brachypodium distachyon
Bradi2g43310 10.0kb upstream 10.0kb upstream 10000 false Bd2: 43555440-43565439 Brachypodium distachyon
Bradi2g43310 10.0kb downstream 10.0kb downstream 13556 true Bd2: 43541884-43555439 Brachypodium distachyon
Bradi2g43310 10.0kb downstream 10.0kb downstream 10000 false Bd2: 43541884-43551883 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578922 5269 Grass View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.313        
cufflinks 2.661        
cufflinks 2.523        
cufflinks 2.225        
cufflinks 0.968       Low
cufflinks 2.194        
cufflinks 2.36        
cufflinks 2.097        
cufflinks 2.22        
cufflinks 1.682        
cufflinks 1.683        
cufflinks 2.094        
cufflinks 1.473        
cufflinks 1.7        
cufflinks 1.378        
cufflinks 2.095        
cufflinks 1.752        
cufflinks 3.891       High
cufflinks 2.753        
cufflinks 0.41       Low
cufflinks 2.391        
cufflinks 2.469        
cufflinks 1.956        
cufflinks 2.0        
cufflinks 2.204        
cufflinks 2.468        
cufflinks 2.139        
cufflinks 2.43        
cufflinks 2.594        
cufflinks 2.513        

0 Strain