Gene : Bradi2g43200 B. distachyon v3.1
Defline:  (1 of 2) KOG3114 - Uncharacterized conserved protein Genomic Order:  5184
Name:  ? Bradi2g43200 Secondary Identifier:  ? PAC:32772272
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g43200 0.5kb upstream 0.5kb upstream 3071 true Bd2: 43462390-43465460 Brachypodium distachyon
Bradi2g43200 0.5kb upstream 0.5kb upstream 500 false Bd2: 43464961-43465460 Brachypodium distachyon
Bradi2g43200 0.5kb downstream 0.5kb downstream 3071 true Bd2: 43461890-43464960 Brachypodium distachyon
Bradi2g43200 0.5kb downstream 0.5kb downstream 500 false Bd2: 43461890-43462389 Brachypodium distachyon
Bradi2g43200 1.0kb upstream 1.0kb upstream 3571 true Bd2: 43462390-43465960 Brachypodium distachyon
Bradi2g43200 1.0kb upstream 1.0kb upstream 1000 false Bd2: 43464961-43465960 Brachypodium distachyon
Bradi2g43200 1.0kb downstream 1.0kb downstream 3571 true Bd2: 43461390-43464960 Brachypodium distachyon
Bradi2g43200 1.0kb downstream 1.0kb downstream 1000 false Bd2: 43461390-43462389 Brachypodium distachyon
Bradi2g43200 2.0kb upstream 2.0kb upstream 4571 true Bd2: 43462390-43466960 Brachypodium distachyon
Bradi2g43200 2.0kb upstream 2.0kb upstream 2000 false Bd2: 43464961-43466960 Brachypodium distachyon
Bradi2g43200 2.0kb downstream 2.0kb downstream 4571 true Bd2: 43460390-43464960 Brachypodium distachyon
Bradi2g43200 2.0kb downstream 2.0kb downstream 2000 false Bd2: 43460390-43462389 Brachypodium distachyon
Bradi2g43200 5.0kb upstream 5.0kb upstream 7571 true Bd2: 43462390-43469960 Brachypodium distachyon
Bradi2g43200 5.0kb upstream 5.0kb upstream 5000 false Bd2: 43464961-43469960 Brachypodium distachyon
Bradi2g43200 5.0kb downstream 5.0kb downstream 7571 true Bd2: 43457390-43464960 Brachypodium distachyon
Bradi2g43200 5.0kb downstream 5.0kb downstream 5000 false Bd2: 43457390-43462389 Brachypodium distachyon
Bradi2g43200 10.0kb upstream 10.0kb upstream 12571 true Bd2: 43462390-43474960 Brachypodium distachyon
Bradi2g43200 10.0kb upstream 10.0kb upstream 10000 false Bd2: 43464961-43474960 Brachypodium distachyon
Bradi2g43200 10.0kb downstream 10.0kb downstream 12571 true Bd2: 43452390-43464960 Brachypodium distachyon
Bradi2g43200 10.0kb downstream 10.0kb downstream 10000 false Bd2: 43452390-43462389 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570968 5269 Grass View MSA
122045240 5273 Angiosperm View MSA
121344088 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.469     High  
cufflinks 11.929     High  
cufflinks 12.405     High  
cufflinks 12.012     High  
cufflinks 12.074     High  
cufflinks 11.409     High  
cufflinks 11.829     High  
cufflinks 14.314     High  
cufflinks 11.271     High  
cufflinks 10.392     High  
cufflinks 7.279       Low
cufflinks 10.213     High  
cufflinks 5.58       Low
cufflinks 6.283       Low
cufflinks 11.911     High  
cufflinks 11.731     High  
cufflinks 15.324     High  
cufflinks 24.566     High High
cufflinks 24.905     High High
cufflinks 10.191        
cufflinks 25.359     High High
cufflinks 11.972     High  
cufflinks 13.206     High  
cufflinks 13.479     High  
cufflinks 11.524     High  
cufflinks 11.365     High  
cufflinks 7.511       Low
cufflinks 11.646     High  
cufflinks 10.543        
cufflinks 20.489     High High

0 Strain