Gene : Bradi2g44020 B. distachyon v3.1
Defline:  (1 of 62) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  5281
Name:  ? Bradi2g44020 Secondary Identifier:  ? PAC:32770952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g44020 0.5kb upstream 0.5kb upstream 1755 true Bd2: 44271007-44272761 Brachypodium distachyon
Bradi2g44020 0.5kb upstream 0.5kb upstream 500 false Bd2: 44271007-44271506 Brachypodium distachyon
Bradi2g44020 0.5kb downstream 0.5kb downstream 1755 true Bd2: 44271507-44273261 Brachypodium distachyon
Bradi2g44020 0.5kb downstream 0.5kb downstream 500 false Bd2: 44272762-44273261 Brachypodium distachyon
Bradi2g44020 1.0kb upstream 1.0kb upstream 2255 true Bd2: 44270507-44272761 Brachypodium distachyon
Bradi2g44020 1.0kb upstream 1.0kb upstream 1000 false Bd2: 44270507-44271506 Brachypodium distachyon
Bradi2g44020 1.0kb downstream 1.0kb downstream 2255 true Bd2: 44271507-44273761 Brachypodium distachyon
Bradi2g44020 1.0kb downstream 1.0kb downstream 1000 false Bd2: 44272762-44273761 Brachypodium distachyon
Bradi2g44020 2.0kb upstream 2.0kb upstream 3255 true Bd2: 44269507-44272761 Brachypodium distachyon
Bradi2g44020 2.0kb upstream 2.0kb upstream 2000 false Bd2: 44269507-44271506 Brachypodium distachyon
Bradi2g44020 2.0kb downstream 2.0kb downstream 3255 true Bd2: 44271507-44274761 Brachypodium distachyon
Bradi2g44020 2.0kb downstream 2.0kb downstream 2000 false Bd2: 44272762-44274761 Brachypodium distachyon
Bradi2g44020 5.0kb upstream 5.0kb upstream 6255 true Bd2: 44266507-44272761 Brachypodium distachyon
Bradi2g44020 5.0kb upstream 5.0kb upstream 5000 false Bd2: 44266507-44271506 Brachypodium distachyon
Bradi2g44020 5.0kb downstream 5.0kb downstream 6255 true Bd2: 44271507-44277761 Brachypodium distachyon
Bradi2g44020 5.0kb downstream 5.0kb downstream 5000 false Bd2: 44272762-44277761 Brachypodium distachyon
Bradi2g44020 10.0kb upstream 10.0kb upstream 11255 true Bd2: 44261507-44272761 Brachypodium distachyon
Bradi2g44020 10.0kb upstream 10.0kb upstream 10000 false Bd2: 44261507-44271506 Brachypodium distachyon
Bradi2g44020 10.0kb downstream 10.0kb downstream 11255 true Bd2: 44271507-44282761 Brachypodium distachyon
Bradi2g44020 10.0kb downstream 10.0kb downstream 10000 false Bd2: 44272762-44282761 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574530 5269 Grass View MSA
122043658 5273 Angiosperm View MSA
121348077 5274 Embryophyte View MSA
123380721 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.092        
cufflinks 0.175        
cufflinks 0.105        
cufflinks 0.316        
cufflinks 0.195        
cufflinks 0.104        
cufflinks 0.104        
cufflinks 0.148        
cufflinks 0.1     Low  
cufflinks 0.196        
cufflinks 0.013     Low Low
cufflinks 0.121        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low Low
cufflinks 0.043     Low Low
cufflinks 0.096        
cufflinks 0.899       High
cufflinks 0.213        
cufflinks 0.053     Low Low
cufflinks 0.163        
cufflinks 0.612       High
cufflinks 0.1     Low  
cufflinks 0.116        
cufflinks 0.153        
cufflinks 0.203        
cufflinks 0.105     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.162        
cufflinks 0.074     Low  
cufflinks 0.586       High

0 Strain