Gene : Bradi4g05897 B. distachyon v3.1
Defline:  (1 of 2) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  764
Name:  ? Bradi4g05897 Secondary Identifier:  ? PAC:32787281
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6163 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g05897 0.5kb upstream 0.5kb upstream 5417 true Bd4: 4885509-4890925 Brachypodium distachyon
Bradi4g05897 0.5kb upstream 0.5kb upstream 500 false Bd4: 4885509-4886008 Brachypodium distachyon
Bradi4g05897 0.5kb downstream 0.5kb downstream 5417 true Bd4: 4886009-4891425 Brachypodium distachyon
Bradi4g05897 0.5kb downstream 0.5kb downstream 500 false Bd4: 4890926-4891425 Brachypodium distachyon
Bradi4g05897 1.0kb upstream 1.0kb upstream 5917 true Bd4: 4885009-4890925 Brachypodium distachyon
Bradi4g05897 1.0kb upstream 1.0kb upstream 1000 false Bd4: 4885009-4886008 Brachypodium distachyon
Bradi4g05897 1.0kb downstream 1.0kb downstream 5917 true Bd4: 4886009-4891925 Brachypodium distachyon
Bradi4g05897 1.0kb downstream 1.0kb downstream 1000 false Bd4: 4890926-4891925 Brachypodium distachyon
Bradi4g05897 2.0kb upstream 2.0kb upstream 6917 true Bd4: 4884009-4890925 Brachypodium distachyon
Bradi4g05897 2.0kb upstream 2.0kb upstream 2000 false Bd4: 4884009-4886008 Brachypodium distachyon
Bradi4g05897 2.0kb downstream 2.0kb downstream 6917 true Bd4: 4886009-4892925 Brachypodium distachyon
Bradi4g05897 2.0kb downstream 2.0kb downstream 2000 false Bd4: 4890926-4892925 Brachypodium distachyon
Bradi4g05897 5.0kb upstream 5.0kb upstream 9917 true Bd4: 4881009-4890925 Brachypodium distachyon
Bradi4g05897 5.0kb upstream 5.0kb upstream 5000 false Bd4: 4881009-4886008 Brachypodium distachyon
Bradi4g05897 5.0kb downstream 5.0kb downstream 9917 true Bd4: 4886009-4895925 Brachypodium distachyon
Bradi4g05897 5.0kb downstream 5.0kb downstream 5000 false Bd4: 4890926-4895925 Brachypodium distachyon
Bradi4g05897 10.0kb upstream 10.0kb upstream 14917 true Bd4: 4876009-4890925 Brachypodium distachyon
Bradi4g05897 10.0kb upstream 10.0kb upstream 10000 false Bd4: 4876009-4886008 Brachypodium distachyon
Bradi4g05897 10.0kb downstream 10.0kb downstream 14917 true Bd4: 4886009-4900925 Brachypodium distachyon
Bradi4g05897 10.0kb downstream 10.0kb downstream 10000 false Bd4: 4890926-4900925 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583290 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.593     High  
cufflinks 14.327     High  
cufflinks 14.594     High  
cufflinks 16.375     High  
cufflinks 11.005     High  
cufflinks 15.466     High  
cufflinks 12.38     High  
cufflinks 15.768     High  
cufflinks 16.335     High  
cufflinks 12.928     High  
cufflinks 13.818     High  
cufflinks 16.02     High  
cufflinks 14.899     High  
cufflinks 13.51     High  
cufflinks 15.486     High  
cufflinks 14.373     High  
cufflinks 12.819     High  
cufflinks 12.832     High  
cufflinks 9.219       Low
cufflinks 3.939       Low
cufflinks 15.48     High  
cufflinks 16.175     High  
cufflinks 16.133     High  
cufflinks 17.854     High  
cufflinks 15.517     High  
cufflinks 15.694     High  
cufflinks 18.333     High High
cufflinks 14.991     High  
cufflinks 15.166     High  
cufflinks 12.443     High  

0 Strain