Gene : Bradi2g45000 B. distachyon v3.1
Defline:  (1 of 1) PTHR24326:SF114 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATED Genomic Order:  5376
Name:  ? Bradi2g45000 Secondary Identifier:  ? PAC:32779418
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g45000 0.5kb upstream 0.5kb upstream 3894 true Bd2: 45157212-45161105 Brachypodium distachyon
Bradi2g45000 0.5kb upstream 0.5kb upstream 500 false Bd2: 45160606-45161105 Brachypodium distachyon
Bradi2g45000 0.5kb downstream 0.5kb downstream 3894 true Bd2: 45156712-45160605 Brachypodium distachyon
Bradi2g45000 0.5kb downstream 0.5kb downstream 500 false Bd2: 45156712-45157211 Brachypodium distachyon
Bradi2g45000 1.0kb upstream 1.0kb upstream 4394 true Bd2: 45157212-45161605 Brachypodium distachyon
Bradi2g45000 1.0kb upstream 1.0kb upstream 1000 false Bd2: 45160606-45161605 Brachypodium distachyon
Bradi2g45000 1.0kb downstream 1.0kb downstream 4394 true Bd2: 45156212-45160605 Brachypodium distachyon
Bradi2g45000 1.0kb downstream 1.0kb downstream 1000 false Bd2: 45156212-45157211 Brachypodium distachyon
Bradi2g45000 2.0kb upstream 2.0kb upstream 5394 true Bd2: 45157212-45162605 Brachypodium distachyon
Bradi2g45000 2.0kb upstream 2.0kb upstream 2000 false Bd2: 45160606-45162605 Brachypodium distachyon
Bradi2g45000 2.0kb downstream 2.0kb downstream 5394 true Bd2: 45155212-45160605 Brachypodium distachyon
Bradi2g45000 2.0kb downstream 2.0kb downstream 2000 false Bd2: 45155212-45157211 Brachypodium distachyon
Bradi2g45000 5.0kb upstream 5.0kb upstream 8394 true Bd2: 45157212-45165605 Brachypodium distachyon
Bradi2g45000 5.0kb upstream 5.0kb upstream 5000 false Bd2: 45160606-45165605 Brachypodium distachyon
Bradi2g45000 5.0kb downstream 5.0kb downstream 8394 true Bd2: 45152212-45160605 Brachypodium distachyon
Bradi2g45000 5.0kb downstream 5.0kb downstream 5000 false Bd2: 45152212-45157211 Brachypodium distachyon
Bradi2g45000 10.0kb upstream 10.0kb upstream 13394 true Bd2: 45157212-45170605 Brachypodium distachyon
Bradi2g45000 10.0kb upstream 10.0kb upstream 10000 false Bd2: 45160606-45170605 Brachypodium distachyon
Bradi2g45000 10.0kb downstream 10.0kb downstream 13394 true Bd2: 45147212-45160605 Brachypodium distachyon
Bradi2g45000 10.0kb downstream 10.0kb downstream 10000 false Bd2: 45147212-45157211 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570184 5269 Grass View MSA
122043928 5273 Angiosperm View MSA
121351534 5274 Embryophyte View MSA
123382211 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204        
cufflinks 0.121        
cufflinks 0.156        
cufflinks 0.125        
cufflinks 0.307        
cufflinks 0.148        
cufflinks 0.163        
cufflinks 0.077     Low  
cufflinks 0.133        
cufflinks 0.134        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.07     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 0.121        
cufflinks 0.128     Low  
cufflinks 0.338        
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.313        
cufflinks 0.118     Low  
cufflinks 0.098        
cufflinks 0.1     Low  
cufflinks 0.218        
cufflinks 0.123        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.212        
cufflinks 0.307        
cufflinks 0.2        

0 Strain