Gene : Bradi2g45200 B. distachyon v3.1
Defline:  (1 of 5) K00026 - malate dehydrogenase (MDH2) Genomic Order:  5406
Name:  ? Bradi2g45200 Secondary Identifier:  ? PAC:32782318
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon GLYOXYLATE-BYPASS Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-5690 Brachypodium distachyon pathologic  
Bdistachyon PWY-5913 Brachypodium distachyon pathologic  
Bdistachyon PWY-7115 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g45200 0.5kb upstream 0.5kb upstream 4637 true Bd2: 45357340-45361976 Brachypodium distachyon
Bradi2g45200 0.5kb upstream 0.5kb upstream 500 false Bd2: 45357340-45357839 Brachypodium distachyon
Bradi2g45200 0.5kb downstream 0.5kb downstream 4637 true Bd2: 45357840-45362476 Brachypodium distachyon
Bradi2g45200 0.5kb downstream 0.5kb downstream 500 false Bd2: 45361977-45362476 Brachypodium distachyon
Bradi2g45200 1.0kb upstream 1.0kb upstream 5137 true Bd2: 45356840-45361976 Brachypodium distachyon
Bradi2g45200 1.0kb upstream 1.0kb upstream 1000 false Bd2: 45356840-45357839 Brachypodium distachyon
Bradi2g45200 1.0kb downstream 1.0kb downstream 5137 true Bd2: 45357840-45362976 Brachypodium distachyon
Bradi2g45200 1.0kb downstream 1.0kb downstream 1000 false Bd2: 45361977-45362976 Brachypodium distachyon
Bradi2g45200 2.0kb upstream 2.0kb upstream 6137 true Bd2: 45355840-45361976 Brachypodium distachyon
Bradi2g45200 2.0kb upstream 2.0kb upstream 2000 false Bd2: 45355840-45357839 Brachypodium distachyon
Bradi2g45200 2.0kb downstream 2.0kb downstream 6137 true Bd2: 45357840-45363976 Brachypodium distachyon
Bradi2g45200 2.0kb downstream 2.0kb downstream 2000 false Bd2: 45361977-45363976 Brachypodium distachyon
Bradi2g45200 5.0kb upstream 5.0kb upstream 9137 true Bd2: 45352840-45361976 Brachypodium distachyon
Bradi2g45200 5.0kb upstream 5.0kb upstream 5000 false Bd2: 45352840-45357839 Brachypodium distachyon
Bradi2g45200 5.0kb downstream 5.0kb downstream 9137 true Bd2: 45357840-45366976 Brachypodium distachyon
Bradi2g45200 5.0kb downstream 5.0kb downstream 5000 false Bd2: 45361977-45366976 Brachypodium distachyon
Bradi2g45200 10.0kb upstream 10.0kb upstream 14137 true Bd2: 45347840-45361976 Brachypodium distachyon
Bradi2g45200 10.0kb upstream 10.0kb upstream 10000 false Bd2: 45347840-45357839 Brachypodium distachyon
Bradi2g45200 10.0kb downstream 10.0kb downstream 14137 true Bd2: 45357840-45371976 Brachypodium distachyon
Bradi2g45200 10.0kb downstream 10.0kb downstream 10000 false Bd2: 45361977-45371976 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588108 5269 Grass View MSA
122042635 5273 Angiosperm View MSA
121345492 5274 Embryophyte View MSA
123423974 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.766     High  
cufflinks 42.129     High  
cufflinks 38.436     High  
cufflinks 45.835     High  
cufflinks 29.719     High  
cufflinks 34.919     High  
cufflinks 40.15     High  
cufflinks 29.639     High  
cufflinks 29.775     High  
cufflinks 33.251     High  
cufflinks 6.458       Low
cufflinks 33.106     High  
cufflinks 7.776     High Low
cufflinks 8.455     High Low
cufflinks 29.593     High  
cufflinks 42.62     High  
cufflinks 60.699     High  
cufflinks 60.83     High  
cufflinks 64.85     High High
cufflinks 17.534     High  
cufflinks 79.066     High High
cufflinks 34.15     High  
cufflinks 30.109     High  
cufflinks 33.711     High  
cufflinks 39.045     High  
cufflinks 39.04     High  
cufflinks 10.418     High Low
cufflinks 36.516     High  
cufflinks 37.342     High  
cufflinks 67.301     High High

0 Strain