Gene : Bradi2g45550 B. distachyon v3.1
Defline:  (1 of 10) K06689 - ubiquitin-conjugating enzyme E2 D/E (UBE2D_E, UBC4, UBC5) Genomic Order:  5448
Name:  ? Bradi2g45550 Secondary Identifier:  ? PAC:32777952
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g45550 0.5kb upstream 0.5kb upstream 5027 true Bd2: 45707450-45712476 Brachypodium distachyon
Bradi2g45550 0.5kb upstream 0.5kb upstream 500 false Bd2: 45711977-45712476 Brachypodium distachyon
Bradi2g45550 0.5kb downstream 0.5kb downstream 5027 true Bd2: 45706950-45711976 Brachypodium distachyon
Bradi2g45550 0.5kb downstream 0.5kb downstream 500 false Bd2: 45706950-45707449 Brachypodium distachyon
Bradi2g45550 1.0kb upstream 1.0kb upstream 5527 true Bd2: 45707450-45712976 Brachypodium distachyon
Bradi2g45550 1.0kb upstream 1.0kb upstream 1000 false Bd2: 45711977-45712976 Brachypodium distachyon
Bradi2g45550 1.0kb downstream 1.0kb downstream 5527 true Bd2: 45706450-45711976 Brachypodium distachyon
Bradi2g45550 1.0kb downstream 1.0kb downstream 1000 false Bd2: 45706450-45707449 Brachypodium distachyon
Bradi2g45550 2.0kb upstream 2.0kb upstream 6527 true Bd2: 45707450-45713976 Brachypodium distachyon
Bradi2g45550 2.0kb upstream 2.0kb upstream 2000 false Bd2: 45711977-45713976 Brachypodium distachyon
Bradi2g45550 2.0kb downstream 2.0kb downstream 6527 true Bd2: 45705450-45711976 Brachypodium distachyon
Bradi2g45550 2.0kb downstream 2.0kb downstream 2000 false Bd2: 45705450-45707449 Brachypodium distachyon
Bradi2g45550 5.0kb upstream 5.0kb upstream 9527 true Bd2: 45707450-45716976 Brachypodium distachyon
Bradi2g45550 5.0kb upstream 5.0kb upstream 5000 false Bd2: 45711977-45716976 Brachypodium distachyon
Bradi2g45550 5.0kb downstream 5.0kb downstream 9527 true Bd2: 45702450-45711976 Brachypodium distachyon
Bradi2g45550 5.0kb downstream 5.0kb downstream 5000 false Bd2: 45702450-45707449 Brachypodium distachyon
Bradi2g45550 10.0kb upstream 10.0kb upstream 14527 true Bd2: 45707450-45721976 Brachypodium distachyon
Bradi2g45550 10.0kb upstream 10.0kb upstream 10000 false Bd2: 45711977-45721976 Brachypodium distachyon
Bradi2g45550 10.0kb downstream 10.0kb downstream 14527 true Bd2: 45697450-45711976 Brachypodium distachyon
Bradi2g45550 10.0kb downstream 10.0kb downstream 10000 false Bd2: 45697450-45707449 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993289 5273 Angiosperm View MSA
124576931 5269 Grass View MSA
121263582 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.666     High High
cufflinks 4.139       Low
cufflinks 3.99       Low
cufflinks 4.335       Low
cufflinks 6.757        
cufflinks 7.769        
cufflinks 6.429        
cufflinks 7.603        
cufflinks 8.067        
cufflinks 8.935        
cufflinks 11.159     High  
cufflinks 7.942        
cufflinks 12.985     High High
cufflinks 11.567     High High
cufflinks 9.311     High  
cufflinks 6.601        
cufflinks 9.77        
cufflinks 10.641        
cufflinks 5.608        
cufflinks 3.787       Low
cufflinks 10.765        
cufflinks 5.117        
cufflinks 7.02        
cufflinks 9.672     High  
cufflinks 9.355        
cufflinks 4.87        
cufflinks 12.233     High High
cufflinks 5.448        
cufflinks 5.021        
cufflinks 5.152        

0 Strain