Gene : Bradi2g42340 B. distachyon v3.1
Defline:  (1 of 2) PTHR10799:SF603 - PROTEIN PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 Genomic Order:  5070
Name:  ? Bradi2g42340 Secondary Identifier:  ? PAC:32778896
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g42340 0.5kb upstream 0.5kb upstream 25228 true Bd2: 42563460-42588687 Brachypodium distachyon
Bradi2g42340 0.5kb upstream 0.5kb upstream 500 false Bd2: 42588188-42588687 Brachypodium distachyon
Bradi2g42340 0.5kb downstream 0.5kb downstream 25228 true Bd2: 42562960-42588187 Brachypodium distachyon
Bradi2g42340 0.5kb downstream 0.5kb downstream 500 false Bd2: 42562960-42563459 Brachypodium distachyon
Bradi2g42340 1.0kb upstream 1.0kb upstream 25728 true Bd2: 42563460-42589187 Brachypodium distachyon
Bradi2g42340 1.0kb upstream 1.0kb upstream 1000 false Bd2: 42588188-42589187 Brachypodium distachyon
Bradi2g42340 1.0kb downstream 1.0kb downstream 25728 true Bd2: 42562460-42588187 Brachypodium distachyon
Bradi2g42340 1.0kb downstream 1.0kb downstream 1000 false Bd2: 42562460-42563459 Brachypodium distachyon
Bradi2g42340 2.0kb upstream 2.0kb upstream 26728 true Bd2: 42563460-42590187 Brachypodium distachyon
Bradi2g42340 2.0kb upstream 2.0kb upstream 2000 false Bd2: 42588188-42590187 Brachypodium distachyon
Bradi2g42340 2.0kb downstream 2.0kb downstream 26728 true Bd2: 42561460-42588187 Brachypodium distachyon
Bradi2g42340 2.0kb downstream 2.0kb downstream 2000 false Bd2: 42561460-42563459 Brachypodium distachyon
Bradi2g42340 5.0kb upstream 5.0kb upstream 29728 true Bd2: 42563460-42593187 Brachypodium distachyon
Bradi2g42340 5.0kb upstream 5.0kb upstream 5000 false Bd2: 42588188-42593187 Brachypodium distachyon
Bradi2g42340 5.0kb downstream 5.0kb downstream 29728 true Bd2: 42558460-42588187 Brachypodium distachyon
Bradi2g42340 5.0kb downstream 5.0kb downstream 5000 false Bd2: 42558460-42563459 Brachypodium distachyon
Bradi2g42340 10.0kb upstream 10.0kb upstream 34728 true Bd2: 42563460-42598187 Brachypodium distachyon
Bradi2g42340 10.0kb upstream 10.0kb upstream 10000 false Bd2: 42588188-42598187 Brachypodium distachyon
Bradi2g42340 10.0kb downstream 10.0kb downstream 34728 true Bd2: 42553460-42588187 Brachypodium distachyon
Bradi2g42340 10.0kb downstream 10.0kb downstream 10000 false Bd2: 42553460-42563459 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124480260 5269 Grass View MSA
122045682 5273 Angiosperm View MSA
121347848 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low  
cufflinks 0.067     Low High
cufflinks 0.063     Low  
cufflinks 0.044     Low  
cufflinks 0.008     Low Low
cufflinks 0.058     Low  
cufflinks 0.05     Low  
cufflinks 0.038     Low  
cufflinks 0.055     Low  
cufflinks 0.019     Low  
cufflinks 0.022     Low  
cufflinks 0.055     Low  
cufflinks 0.025     Low  
cufflinks 0.019     Low  
cufflinks 0.021     Low  
cufflinks 0.055     Low  
cufflinks 0.011     Low Low
cufflinks 0.078     Low High
cufflinks 0.021     Low  
cufflinks 0.005     Low Low
cufflinks 0.026     Low  
cufflinks 0.059     Low  
cufflinks 0.042     Low  
cufflinks 0.042     Low  
cufflinks 0.043     Low  
cufflinks 0.046     Low  
cufflinks 0.028     Low  
cufflinks 0.045     Low  
cufflinks 0.046     Low  
cufflinks 0.055     Low  

0 Strain