Gene : Bradi4g00760 B. distachyon v3.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF11 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  67
Name:  ? Bradi4g00760 Secondary Identifier:  ? PAC:32789714
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g00760 0.5kb upstream 0.5kb upstream 3828 true Bd4: 373314-377141 Brachypodium distachyon
Bradi4g00760 0.5kb upstream 0.5kb upstream 500 false Bd4: 376642-377141 Brachypodium distachyon
Bradi4g00760 0.5kb downstream 0.5kb downstream 3828 true Bd4: 372814-376641 Brachypodium distachyon
Bradi4g00760 0.5kb downstream 0.5kb downstream 500 false Bd4: 372814-373313 Brachypodium distachyon
Bradi4g00760 1.0kb upstream 1.0kb upstream 4328 true Bd4: 373314-377641 Brachypodium distachyon
Bradi4g00760 1.0kb upstream 1.0kb upstream 1000 false Bd4: 376642-377641 Brachypodium distachyon
Bradi4g00760 1.0kb downstream 1.0kb downstream 4328 true Bd4: 372314-376641 Brachypodium distachyon
Bradi4g00760 1.0kb downstream 1.0kb downstream 1000 false Bd4: 372314-373313 Brachypodium distachyon
Bradi4g00760 2.0kb upstream 2.0kb upstream 5328 true Bd4: 373314-378641 Brachypodium distachyon
Bradi4g00760 2.0kb upstream 2.0kb upstream 2000 false Bd4: 376642-378641 Brachypodium distachyon
Bradi4g00760 2.0kb downstream 2.0kb downstream 5328 true Bd4: 371314-376641 Brachypodium distachyon
Bradi4g00760 2.0kb downstream 2.0kb downstream 2000 false Bd4: 371314-373313 Brachypodium distachyon
Bradi4g00760 5.0kb upstream 5.0kb upstream 8328 true Bd4: 373314-381641 Brachypodium distachyon
Bradi4g00760 5.0kb upstream 5.0kb upstream 5000 false Bd4: 376642-381641 Brachypodium distachyon
Bradi4g00760 5.0kb downstream 5.0kb downstream 8328 true Bd4: 368314-376641 Brachypodium distachyon
Bradi4g00760 5.0kb downstream 5.0kb downstream 5000 false Bd4: 368314-373313 Brachypodium distachyon
Bradi4g00760 10.0kb upstream 10.0kb upstream 13328 true Bd4: 373314-386641 Brachypodium distachyon
Bradi4g00760 10.0kb upstream 10.0kb upstream 10000 false Bd4: 376642-386641 Brachypodium distachyon
Bradi4g00760 10.0kb downstream 10.0kb downstream 13328 true Bd4: 363314-376641 Brachypodium distachyon
Bradi4g00760 10.0kb downstream 10.0kb downstream 10000 false Bd4: 363314-373313 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569620 5269 Grass View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.04       Low
cufflinks 1.502        
cufflinks 1.784        
cufflinks 1.411        
cufflinks 1.918        
cufflinks 1.394        
cufflinks 1.584        
cufflinks 1.64        
cufflinks 1.495        
cufflinks 2.158        
cufflinks 1.81        
cufflinks 1.31       Low
cufflinks 1.682        
cufflinks 1.792        
cufflinks 1.226       Low
cufflinks 1.361        
cufflinks 1.824        
cufflinks 2.104        
cufflinks 2.756       High
cufflinks 3.038       High
cufflinks 2.98       High
cufflinks 1.465        
cufflinks 1.429        
cufflinks 1.405        
cufflinks 1.401        
cufflinks 1.876        
cufflinks 1.933        
cufflinks 2.084        
cufflinks 1.86        
cufflinks 1.817        

0 Strain