Gene : Bradi2g48590 B. distachyon v3.1
Defline:  (1 of 1) PTHR10210//PTHR10210:SF45 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE // RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3, CHLOROPLASTIC Genomic Order:  5838
Name:  ? Bradi2g48590 Secondary Identifier:  ? PAC:32778454
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY0-662 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g48590 0.5kb upstream 0.5kb upstream 4108 true Bd2: 48609473-48613580 Brachypodium distachyon
Bradi2g48590 0.5kb upstream 0.5kb upstream 500 false Bd2: 48609473-48609972 Brachypodium distachyon
Bradi2g48590 0.5kb downstream 0.5kb downstream 4108 true Bd2: 48609973-48614080 Brachypodium distachyon
Bradi2g48590 0.5kb downstream 0.5kb downstream 500 false Bd2: 48613581-48614080 Brachypodium distachyon
Bradi2g48590 1.0kb upstream 1.0kb upstream 4608 true Bd2: 48608973-48613580 Brachypodium distachyon
Bradi2g48590 1.0kb upstream 1.0kb upstream 1000 false Bd2: 48608973-48609972 Brachypodium distachyon
Bradi2g48590 1.0kb downstream 1.0kb downstream 4608 true Bd2: 48609973-48614580 Brachypodium distachyon
Bradi2g48590 1.0kb downstream 1.0kb downstream 1000 false Bd2: 48613581-48614580 Brachypodium distachyon
Bradi2g48590 2.0kb upstream 2.0kb upstream 5608 true Bd2: 48607973-48613580 Brachypodium distachyon
Bradi2g48590 2.0kb upstream 2.0kb upstream 2000 false Bd2: 48607973-48609972 Brachypodium distachyon
Bradi2g48590 2.0kb downstream 2.0kb downstream 5608 true Bd2: 48609973-48615580 Brachypodium distachyon
Bradi2g48590 2.0kb downstream 2.0kb downstream 2000 false Bd2: 48613581-48615580 Brachypodium distachyon
Bradi2g48590 5.0kb upstream 5.0kb upstream 8608 true Bd2: 48604973-48613580 Brachypodium distachyon
Bradi2g48590 5.0kb upstream 5.0kb upstream 5000 false Bd2: 48604973-48609972 Brachypodium distachyon
Bradi2g48590 5.0kb downstream 5.0kb downstream 8608 true Bd2: 48609973-48618580 Brachypodium distachyon
Bradi2g48590 5.0kb downstream 5.0kb downstream 5000 false Bd2: 48613581-48618580 Brachypodium distachyon
Bradi2g48590 10.0kb upstream 10.0kb upstream 13608 true Bd2: 48599973-48613580 Brachypodium distachyon
Bradi2g48590 10.0kb upstream 10.0kb upstream 10000 false Bd2: 48599973-48609972 Brachypodium distachyon
Bradi2g48590 10.0kb downstream 10.0kb downstream 13608 true Bd2: 48609973-48623580 Brachypodium distachyon
Bradi2g48590 10.0kb downstream 10.0kb downstream 10000 false Bd2: 48613581-48623580 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584463 5269 Grass View MSA
122048410 5273 Angiosperm View MSA
121347977 5274 Embryophyte View MSA
123424356 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.948        
cufflinks 2.929        
cufflinks 2.557        
cufflinks 2.764        
cufflinks 2.481        
cufflinks 2.493        
cufflinks 2.499        
cufflinks 2.285        
cufflinks 2.375        
cufflinks 2.391        
cufflinks 1.37        
cufflinks 2.376        
cufflinks 0.603       Low
cufflinks 0.333       Low
cufflinks 1.945        
cufflinks 2.564        
cufflinks 2.631        
cufflinks 5.629       High
cufflinks 3.469        
cufflinks 0.421       Low
cufflinks 2.762        
cufflinks 2.764        
cufflinks 2.229        
cufflinks 2.255        
cufflinks 2.339        
cufflinks 2.407        
cufflinks 0.414       Low
cufflinks 2.411        
cufflinks 2.361        
cufflinks 4.516       High

0 Strain