Gene : Bradi2g48557 B. distachyon v3.1
Defline:  (1 of 1) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  5835
Name:  ? Bradi2g48557 Secondary Identifier:  ? PAC:32774680
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g48557 0.5kb upstream 0.5kb upstream 2911 true Bd2: 48589160-48592070 Brachypodium distachyon
Bradi2g48557 0.5kb upstream 0.5kb upstream 500 false Bd2: 48589160-48589659 Brachypodium distachyon
Bradi2g48557 0.5kb downstream 0.5kb downstream 2911 true Bd2: 48589660-48592570 Brachypodium distachyon
Bradi2g48557 0.5kb downstream 0.5kb downstream 500 false Bd2: 48592071-48592570 Brachypodium distachyon
Bradi2g48557 1.0kb upstream 1.0kb upstream 3411 true Bd2: 48588660-48592070 Brachypodium distachyon
Bradi2g48557 1.0kb upstream 1.0kb upstream 1000 false Bd2: 48588660-48589659 Brachypodium distachyon
Bradi2g48557 1.0kb downstream 1.0kb downstream 3411 true Bd2: 48589660-48593070 Brachypodium distachyon
Bradi2g48557 1.0kb downstream 1.0kb downstream 1000 false Bd2: 48592071-48593070 Brachypodium distachyon
Bradi2g48557 2.0kb upstream 2.0kb upstream 4411 true Bd2: 48587660-48592070 Brachypodium distachyon
Bradi2g48557 2.0kb upstream 2.0kb upstream 2000 false Bd2: 48587660-48589659 Brachypodium distachyon
Bradi2g48557 2.0kb downstream 2.0kb downstream 4411 true Bd2: 48589660-48594070 Brachypodium distachyon
Bradi2g48557 2.0kb downstream 2.0kb downstream 2000 false Bd2: 48592071-48594070 Brachypodium distachyon
Bradi2g48557 5.0kb upstream 5.0kb upstream 7411 true Bd2: 48584660-48592070 Brachypodium distachyon
Bradi2g48557 5.0kb upstream 5.0kb upstream 5000 false Bd2: 48584660-48589659 Brachypodium distachyon
Bradi2g48557 5.0kb downstream 5.0kb downstream 7411 true Bd2: 48589660-48597070 Brachypodium distachyon
Bradi2g48557 5.0kb downstream 5.0kb downstream 5000 false Bd2: 48592071-48597070 Brachypodium distachyon
Bradi2g48557 10.0kb upstream 10.0kb upstream 12411 true Bd2: 48579660-48592070 Brachypodium distachyon
Bradi2g48557 10.0kb upstream 10.0kb upstream 10000 false Bd2: 48579660-48589659 Brachypodium distachyon
Bradi2g48557 10.0kb downstream 10.0kb downstream 12411 true Bd2: 48589660-48602070 Brachypodium distachyon
Bradi2g48557 10.0kb downstream 10.0kb downstream 10000 false Bd2: 48592071-48602070 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
124581054 5269 Grass View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.516        
cufflinks 2.966        
cufflinks 4.191        
cufflinks 3.368        
cufflinks 4.417        
cufflinks 4.621        
cufflinks 3.338        
cufflinks 5.478        
cufflinks 6.493        
cufflinks 3.639        
cufflinks 6.191        
cufflinks 2.694        
cufflinks 5.506        
cufflinks 7.943     High High
cufflinks 5.237        
cufflinks 4.14        
cufflinks 2.267        
cufflinks 2.723        
cufflinks 1.156       Low
cufflinks 4.299        
cufflinks 7.646       High
cufflinks 3.55        
cufflinks 3.059        
cufflinks 4.94        
cufflinks 5.266        
cufflinks 3.684        
cufflinks 4.967        
cufflinks 4.253        
cufflinks 3.281        
cufflinks 2.859        

0 Strain