Gene : Bradi2g49040 B. distachyon v3.1
Defline:  (1 of 1) PTHR11972//PTHR11972:SF66 - NADPH OXIDASE // SUBFAMILY NOT NAMED Genomic Order:  5890
Name:  ? Bradi2g49040 Secondary Identifier:  ? PAC:32778786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g49040 0.5kb upstream 0.5kb upstream 9114 true Bd2: 48973170-48982283 Brachypodium distachyon
Bradi2g49040 0.5kb upstream 0.5kb upstream 500 false Bd2: 48973170-48973669 Brachypodium distachyon
Bradi2g49040 0.5kb downstream 0.5kb downstream 9114 true Bd2: 48973670-48982783 Brachypodium distachyon
Bradi2g49040 0.5kb downstream 0.5kb downstream 500 false Bd2: 48982284-48982783 Brachypodium distachyon
Bradi2g49040 1.0kb upstream 1.0kb upstream 9614 true Bd2: 48972670-48982283 Brachypodium distachyon
Bradi2g49040 1.0kb upstream 1.0kb upstream 1000 false Bd2: 48972670-48973669 Brachypodium distachyon
Bradi2g49040 1.0kb downstream 1.0kb downstream 9614 true Bd2: 48973670-48983283 Brachypodium distachyon
Bradi2g49040 1.0kb downstream 1.0kb downstream 1000 false Bd2: 48982284-48983283 Brachypodium distachyon
Bradi2g49040 2.0kb upstream 2.0kb upstream 10614 true Bd2: 48971670-48982283 Brachypodium distachyon
Bradi2g49040 2.0kb upstream 2.0kb upstream 2000 false Bd2: 48971670-48973669 Brachypodium distachyon
Bradi2g49040 2.0kb downstream 2.0kb downstream 10614 true Bd2: 48973670-48984283 Brachypodium distachyon
Bradi2g49040 2.0kb downstream 2.0kb downstream 2000 false Bd2: 48982284-48984283 Brachypodium distachyon
Bradi2g49040 5.0kb upstream 5.0kb upstream 13614 true Bd2: 48968670-48982283 Brachypodium distachyon
Bradi2g49040 5.0kb upstream 5.0kb upstream 5000 false Bd2: 48968670-48973669 Brachypodium distachyon
Bradi2g49040 5.0kb downstream 5.0kb downstream 13614 true Bd2: 48973670-48987283 Brachypodium distachyon
Bradi2g49040 5.0kb downstream 5.0kb downstream 5000 false Bd2: 48982284-48987283 Brachypodium distachyon
Bradi2g49040 10.0kb upstream 10.0kb upstream 18614 true Bd2: 48963670-48982283 Brachypodium distachyon
Bradi2g49040 10.0kb upstream 10.0kb upstream 10000 false Bd2: 48963670-48973669 Brachypodium distachyon
Bradi2g49040 10.0kb downstream 10.0kb downstream 18614 true Bd2: 48973670-48992283 Brachypodium distachyon
Bradi2g49040 10.0kb downstream 10.0kb downstream 10000 false Bd2: 48982284-48992283 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583719 5269 Grass View MSA
122049816 5273 Angiosperm View MSA
121350202 5274 Embryophyte View MSA
123427915 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.917        
cufflinks 1.594        
cufflinks 1.54        
cufflinks 1.582        
cufflinks 1.654        
cufflinks 1.803        
cufflinks 1.366        
cufflinks 2.6        
cufflinks 2.68        
cufflinks 1.454        
cufflinks 1.372        
cufflinks 2.098        
cufflinks 1.297        
cufflinks 0.799       Low
cufflinks 2.693        
cufflinks 1.972        
cufflinks 1.365        
cufflinks 11.421       High
cufflinks 1.944        
cufflinks 0.957       Low
cufflinks 4.515       High
cufflinks 2.362        
cufflinks 2.636        
cufflinks 2.088        
cufflinks 1.778        
cufflinks 1.559        
cufflinks 0.924       Low
cufflinks 1.373        
cufflinks 1.793        
cufflinks 2.971        

0 Strain