Gene : Bradi2g49590 B. distachyon v3.1
Defline:  (1 of 1) PTHR11909//PTHR11909:SF181 - CASEIN KINASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  5953
Name:  ? Bradi2g49590 Secondary Identifier:  ? PAC:32775505
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g49590 0.5kb upstream 0.5kb upstream 6745 true Bd2: 49414274-49421018 Brachypodium distachyon
Bradi2g49590 0.5kb upstream 0.5kb upstream 500 false Bd2: 49420519-49421018 Brachypodium distachyon
Bradi2g49590 0.5kb downstream 0.5kb downstream 6745 true Bd2: 49413774-49420518 Brachypodium distachyon
Bradi2g49590 0.5kb downstream 0.5kb downstream 500 false Bd2: 49413774-49414273 Brachypodium distachyon
Bradi2g49590 1.0kb upstream 1.0kb upstream 7245 true Bd2: 49414274-49421518 Brachypodium distachyon
Bradi2g49590 1.0kb upstream 1.0kb upstream 1000 false Bd2: 49420519-49421518 Brachypodium distachyon
Bradi2g49590 1.0kb downstream 1.0kb downstream 7245 true Bd2: 49413274-49420518 Brachypodium distachyon
Bradi2g49590 1.0kb downstream 1.0kb downstream 1000 false Bd2: 49413274-49414273 Brachypodium distachyon
Bradi2g49590 2.0kb upstream 2.0kb upstream 8245 true Bd2: 49414274-49422518 Brachypodium distachyon
Bradi2g49590 2.0kb upstream 2.0kb upstream 2000 false Bd2: 49420519-49422518 Brachypodium distachyon
Bradi2g49590 2.0kb downstream 2.0kb downstream 8245 true Bd2: 49412274-49420518 Brachypodium distachyon
Bradi2g49590 2.0kb downstream 2.0kb downstream 2000 false Bd2: 49412274-49414273 Brachypodium distachyon
Bradi2g49590 5.0kb upstream 5.0kb upstream 11245 true Bd2: 49414274-49425518 Brachypodium distachyon
Bradi2g49590 5.0kb upstream 5.0kb upstream 5000 false Bd2: 49420519-49425518 Brachypodium distachyon
Bradi2g49590 5.0kb downstream 5.0kb downstream 11245 true Bd2: 49409274-49420518 Brachypodium distachyon
Bradi2g49590 5.0kb downstream 5.0kb downstream 5000 false Bd2: 49409274-49414273 Brachypodium distachyon
Bradi2g49590 10.0kb upstream 10.0kb upstream 16245 true Bd2: 49414274-49430518 Brachypodium distachyon
Bradi2g49590 10.0kb upstream 10.0kb upstream 10000 false Bd2: 49420519-49430518 Brachypodium distachyon
Bradi2g49590 10.0kb downstream 10.0kb downstream 16245 true Bd2: 49404274-49420518 Brachypodium distachyon
Bradi2g49590 10.0kb downstream 10.0kb downstream 10000 false Bd2: 49404274-49414273 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572882 5269 Grass View MSA
122042474 5273 Angiosperm View MSA
121348190 5274 Embryophyte View MSA
123427857 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.564       Low
cufflinks 12.89     High  
cufflinks 13.815     High  
cufflinks 11.986     High  
cufflinks 7.161       Low
cufflinks 11.492     High  
cufflinks 10.971     High  
cufflinks 10.033     High  
cufflinks 11.176     High  
cufflinks 8.748        
cufflinks 13.368     High  
cufflinks 10.824     High  
cufflinks 9.381     High  
cufflinks 10.939     High  
cufflinks 7.062       Low
cufflinks 9.6     High  
cufflinks 8.749        
cufflinks 11.761     High  
cufflinks 15.729     High High
cufflinks 7.359       Low
cufflinks 13.381     High  
cufflinks 12.969     High  
cufflinks 10.69     High  
cufflinks 10.382     High  
cufflinks 10.532     High  
cufflinks 13.549     High  
cufflinks 13.834     High  
cufflinks 12.572     High  
cufflinks 11.325     High  
cufflinks 13.578     High  

0 Strain