Gene : Bradi4g16040 B. distachyon v3.1
Defline:  (1 of 1) K10754 - replication factor C subunit 1 (RFC1) Genomic Order:  2130
Name:  ? Bradi4g16040 Secondary Identifier:  ? PAC:32783404
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g16040 0.5kb upstream 0.5kb upstream 10736 true Bd4: 16655036-16665771 Brachypodium distachyon
Bradi4g16040 0.5kb upstream 0.5kb upstream 500 false Bd4: 16665272-16665771 Brachypodium distachyon
Bradi4g16040 0.5kb downstream 0.5kb downstream 10736 true Bd4: 16654536-16665271 Brachypodium distachyon
Bradi4g16040 0.5kb downstream 0.5kb downstream 500 false Bd4: 16654536-16655035 Brachypodium distachyon
Bradi4g16040 1.0kb upstream 1.0kb upstream 11236 true Bd4: 16655036-16666271 Brachypodium distachyon
Bradi4g16040 1.0kb upstream 1.0kb upstream 1000 false Bd4: 16665272-16666271 Brachypodium distachyon
Bradi4g16040 1.0kb downstream 1.0kb downstream 11236 true Bd4: 16654036-16665271 Brachypodium distachyon
Bradi4g16040 1.0kb downstream 1.0kb downstream 1000 false Bd4: 16654036-16655035 Brachypodium distachyon
Bradi4g16040 2.0kb upstream 2.0kb upstream 12236 true Bd4: 16655036-16667271 Brachypodium distachyon
Bradi4g16040 2.0kb upstream 2.0kb upstream 2000 false Bd4: 16665272-16667271 Brachypodium distachyon
Bradi4g16040 2.0kb downstream 2.0kb downstream 12236 true Bd4: 16653036-16665271 Brachypodium distachyon
Bradi4g16040 2.0kb downstream 2.0kb downstream 2000 false Bd4: 16653036-16655035 Brachypodium distachyon
Bradi4g16040 5.0kb upstream 5.0kb upstream 15236 true Bd4: 16655036-16670271 Brachypodium distachyon
Bradi4g16040 5.0kb upstream 5.0kb upstream 5000 false Bd4: 16665272-16670271 Brachypodium distachyon
Bradi4g16040 5.0kb downstream 5.0kb downstream 15236 true Bd4: 16650036-16665271 Brachypodium distachyon
Bradi4g16040 5.0kb downstream 5.0kb downstream 5000 false Bd4: 16650036-16655035 Brachypodium distachyon
Bradi4g16040 10.0kb upstream 10.0kb upstream 20236 true Bd4: 16655036-16675271 Brachypodium distachyon
Bradi4g16040 10.0kb upstream 10.0kb upstream 10000 false Bd4: 16665272-16675271 Brachypodium distachyon
Bradi4g16040 10.0kb downstream 10.0kb downstream 20236 true Bd4: 16645036-16665271 Brachypodium distachyon
Bradi4g16040 10.0kb downstream 10.0kb downstream 10000 false Bd4: 16645036-16655035 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041518 5273 Angiosperm View MSA
124589304 5269 Grass View MSA
121345302 5274 Embryophyte View MSA
123425414 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.997        
cufflinks 3.951       High
cufflinks 3.627        
cufflinks 3.021        
cufflinks 0.953       Low
cufflinks 3.409        
cufflinks 3.091        
cufflinks 2.533        
cufflinks 3.357        
cufflinks 1.603        
cufflinks 2.177        
cufflinks 2.978        
cufflinks 1.759        
cufflinks 1.806        
cufflinks 2.215        
cufflinks 3.461        
cufflinks 1.66        
cufflinks 3.885       High
cufflinks 1.647        
cufflinks 0.649       Low
cufflinks 1.945        
cufflinks 3.245        
cufflinks 2.748        
cufflinks 2.695        
cufflinks 2.932        
cufflinks 2.736        
cufflinks 2.055        
cufflinks 2.626        
cufflinks 2.652        
cufflinks 3.558        

0 Strain