Gene : Bradi2g45690 B. distachyon v3.1
Defline:  (1 of 1) K03681 - exosome complex component RRP40 (RRP40, EXOSC3) Genomic Order:  5467
Name:  ? Bradi2g45690 Secondary Identifier:  ? PAC:32781605
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g45690 0.5kb upstream 0.5kb upstream 5040 true Bd2: 45916761-45921800 Brachypodium distachyon
Bradi2g45690 0.5kb upstream 0.5kb upstream 500 false Bd2: 45916761-45917260 Brachypodium distachyon
Bradi2g45690 0.5kb downstream 0.5kb downstream 5040 true Bd2: 45917261-45922300 Brachypodium distachyon
Bradi2g45690 0.5kb downstream 0.5kb downstream 500 false Bd2: 45921801-45922300 Brachypodium distachyon
Bradi2g45690 1.0kb upstream 1.0kb upstream 5540 true Bd2: 45916261-45921800 Brachypodium distachyon
Bradi2g45690 1.0kb upstream 1.0kb upstream 1000 false Bd2: 45916261-45917260 Brachypodium distachyon
Bradi2g45690 1.0kb downstream 1.0kb downstream 5540 true Bd2: 45917261-45922800 Brachypodium distachyon
Bradi2g45690 1.0kb downstream 1.0kb downstream 1000 false Bd2: 45921801-45922800 Brachypodium distachyon
Bradi2g45690 2.0kb upstream 2.0kb upstream 6540 true Bd2: 45915261-45921800 Brachypodium distachyon
Bradi2g45690 2.0kb upstream 2.0kb upstream 2000 false Bd2: 45915261-45917260 Brachypodium distachyon
Bradi2g45690 2.0kb downstream 2.0kb downstream 6540 true Bd2: 45917261-45923800 Brachypodium distachyon
Bradi2g45690 2.0kb downstream 2.0kb downstream 2000 false Bd2: 45921801-45923800 Brachypodium distachyon
Bradi2g45690 5.0kb upstream 5.0kb upstream 9540 true Bd2: 45912261-45921800 Brachypodium distachyon
Bradi2g45690 5.0kb upstream 5.0kb upstream 5000 false Bd2: 45912261-45917260 Brachypodium distachyon
Bradi2g45690 5.0kb downstream 5.0kb downstream 9540 true Bd2: 45917261-45926800 Brachypodium distachyon
Bradi2g45690 5.0kb downstream 5.0kb downstream 5000 false Bd2: 45921801-45926800 Brachypodium distachyon
Bradi2g45690 10.0kb upstream 10.0kb upstream 14540 true Bd2: 45907261-45921800 Brachypodium distachyon
Bradi2g45690 10.0kb upstream 10.0kb upstream 10000 false Bd2: 45907261-45917260 Brachypodium distachyon
Bradi2g45690 10.0kb downstream 10.0kb downstream 14540 true Bd2: 45917261-45931800 Brachypodium distachyon
Bradi2g45690 10.0kb downstream 10.0kb downstream 10000 false Bd2: 45921801-45931800 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589254 5269 Grass View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.356        
cufflinks 1.812        
cufflinks 1.87        
cufflinks 1.747        
cufflinks 0.807       Low
cufflinks 1.427        
cufflinks 1.708        
cufflinks 1.251        
cufflinks 1.463        
cufflinks 1.409        
cufflinks 1.256        
cufflinks 0.985        
cufflinks 0.635       Low
cufflinks 1.034        
cufflinks 0.731       Low
cufflinks 1.506        
cufflinks 1.378        
cufflinks 2.362       High
cufflinks 1.482        
cufflinks 0.517       Low
cufflinks 1.867        
cufflinks 1.343        
cufflinks 1.316        
cufflinks 1.494        
cufflinks 1.895        
cufflinks 1.634        
cufflinks 1.219        
cufflinks 1.553        
cufflinks 1.434        
cufflinks 1.615        

0 Strain