Gene : Bradi2g46230 B. distachyon v3.1
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15613//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 2 (WHIM2) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  5537
Name:  ? Bradi2g46230 Secondary Identifier:  ? PAC:32779028
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g46230 0.5kb upstream 0.5kb upstream 14762 true Bd2: 46418382-46433143 Brachypodium distachyon
Bradi2g46230 0.5kb upstream 0.5kb upstream 500 false Bd2: 46418382-46418881 Brachypodium distachyon
Bradi2g46230 0.5kb downstream 0.5kb downstream 14762 true Bd2: 46418882-46433643 Brachypodium distachyon
Bradi2g46230 0.5kb downstream 0.5kb downstream 500 false Bd2: 46433144-46433643 Brachypodium distachyon
Bradi2g46230 1.0kb upstream 1.0kb upstream 15262 true Bd2: 46417882-46433143 Brachypodium distachyon
Bradi2g46230 1.0kb upstream 1.0kb upstream 1000 false Bd2: 46417882-46418881 Brachypodium distachyon
Bradi2g46230 1.0kb downstream 1.0kb downstream 15262 true Bd2: 46418882-46434143 Brachypodium distachyon
Bradi2g46230 1.0kb downstream 1.0kb downstream 1000 false Bd2: 46433144-46434143 Brachypodium distachyon
Bradi2g46230 2.0kb upstream 2.0kb upstream 16262 true Bd2: 46416882-46433143 Brachypodium distachyon
Bradi2g46230 2.0kb upstream 2.0kb upstream 2000 false Bd2: 46416882-46418881 Brachypodium distachyon
Bradi2g46230 2.0kb downstream 2.0kb downstream 16262 true Bd2: 46418882-46435143 Brachypodium distachyon
Bradi2g46230 2.0kb downstream 2.0kb downstream 2000 false Bd2: 46433144-46435143 Brachypodium distachyon
Bradi2g46230 5.0kb upstream 5.0kb upstream 19262 true Bd2: 46413882-46433143 Brachypodium distachyon
Bradi2g46230 5.0kb upstream 5.0kb upstream 5000 false Bd2: 46413882-46418881 Brachypodium distachyon
Bradi2g46230 5.0kb downstream 5.0kb downstream 19262 true Bd2: 46418882-46438143 Brachypodium distachyon
Bradi2g46230 5.0kb downstream 5.0kb downstream 5000 false Bd2: 46433144-46438143 Brachypodium distachyon
Bradi2g46230 10.0kb upstream 10.0kb upstream 24262 true Bd2: 46408882-46433143 Brachypodium distachyon
Bradi2g46230 10.0kb upstream 10.0kb upstream 10000 false Bd2: 46408882-46418881 Brachypodium distachyon
Bradi2g46230 10.0kb downstream 10.0kb downstream 24262 true Bd2: 46418882-46443143 Brachypodium distachyon
Bradi2g46230 10.0kb downstream 10.0kb downstream 10000 false Bd2: 46433144-46443143 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585412 5269 Grass View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.357        
cufflinks 10.428     High  
cufflinks 11.895     High  
cufflinks 7.794        
cufflinks 3.336       Low
cufflinks 9.198        
cufflinks 7.838        
cufflinks 9.565     High  
cufflinks 10.547     High  
cufflinks 6.48        
cufflinks 11.079     High  
cufflinks 12.517     High High
cufflinks 9.62     High  
cufflinks 7.697     High  
cufflinks 8.99     High  
cufflinks 9.763     High  
cufflinks 3.95       Low
cufflinks 10.367        
cufflinks 5.378        
cufflinks 3.702       Low
cufflinks 5.778        
cufflinks 14.277     High High
cufflinks 10.072     High  
cufflinks 8.758        
cufflinks 6.994        
cufflinks 9.916        
cufflinks 10.697     High  
cufflinks 9.945        
cufflinks 10.898     High  
cufflinks 11.114        

0 Strain