Gene : Bradi2g46520 B. distachyon v3.1
Defline:  (1 of 1) PTHR33398:SF2 - 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC Genomic Order:  5577
Name:  ? Bradi2g46520 Secondary Identifier:  ? PAC:32777782
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g46520 0.5kb upstream 0.5kb upstream 2201 true Bd2: 46735546-46737746 Brachypodium distachyon
Bradi2g46520 0.5kb upstream 0.5kb upstream 500 false Bd2: 46735546-46736045 Brachypodium distachyon
Bradi2g46520 0.5kb downstream 0.5kb downstream 2201 true Bd2: 46736046-46738246 Brachypodium distachyon
Bradi2g46520 0.5kb downstream 0.5kb downstream 500 false Bd2: 46737747-46738246 Brachypodium distachyon
Bradi2g46520 1.0kb upstream 1.0kb upstream 2701 true Bd2: 46735046-46737746 Brachypodium distachyon
Bradi2g46520 1.0kb upstream 1.0kb upstream 1000 false Bd2: 46735046-46736045 Brachypodium distachyon
Bradi2g46520 1.0kb downstream 1.0kb downstream 2701 true Bd2: 46736046-46738746 Brachypodium distachyon
Bradi2g46520 1.0kb downstream 1.0kb downstream 1000 false Bd2: 46737747-46738746 Brachypodium distachyon
Bradi2g46520 2.0kb upstream 2.0kb upstream 3701 true Bd2: 46734046-46737746 Brachypodium distachyon
Bradi2g46520 2.0kb upstream 2.0kb upstream 2000 false Bd2: 46734046-46736045 Brachypodium distachyon
Bradi2g46520 2.0kb downstream 2.0kb downstream 3701 true Bd2: 46736046-46739746 Brachypodium distachyon
Bradi2g46520 2.0kb downstream 2.0kb downstream 2000 false Bd2: 46737747-46739746 Brachypodium distachyon
Bradi2g46520 5.0kb upstream 5.0kb upstream 6701 true Bd2: 46731046-46737746 Brachypodium distachyon
Bradi2g46520 5.0kb upstream 5.0kb upstream 5000 false Bd2: 46731046-46736045 Brachypodium distachyon
Bradi2g46520 5.0kb downstream 5.0kb downstream 6701 true Bd2: 46736046-46742746 Brachypodium distachyon
Bradi2g46520 5.0kb downstream 5.0kb downstream 5000 false Bd2: 46737747-46742746 Brachypodium distachyon
Bradi2g46520 10.0kb upstream 10.0kb upstream 11701 true Bd2: 46726046-46737746 Brachypodium distachyon
Bradi2g46520 10.0kb upstream 10.0kb upstream 10000 false Bd2: 46726046-46736045 Brachypodium distachyon
Bradi2g46520 10.0kb downstream 10.0kb downstream 11701 true Bd2: 46736046-46747746 Brachypodium distachyon
Bradi2g46520 10.0kb downstream 10.0kb downstream 10000 false Bd2: 46737747-46747746 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027102 5273 Angiosperm View MSA
124572146 5269 Grass View MSA
121345926 5274 Embryophyte View MSA
123425445 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 212.128     High  
cufflinks 210.517     High  
cufflinks 206.523     High  
cufflinks 212.299     High  
cufflinks 162.156     High  
cufflinks 169.599     High  
cufflinks 218.126     High  
cufflinks 170.054     High  
cufflinks 151.111     High  
cufflinks 239.943     High  
cufflinks 117.33     High  
cufflinks 189.666     High  
cufflinks 125.827     High  
cufflinks 118.19     High  
cufflinks 190.677     High  
cufflinks 210.767     High  
cufflinks 194.29     High  
cufflinks 17.057     High Low
cufflinks 128.127     High  
cufflinks 30.251     High Low
cufflinks 102.048     High  
cufflinks 199.532     High  
cufflinks 152.179     High  
cufflinks 145.175     High  
cufflinks 178.439     High  
cufflinks 239.682     High  
cufflinks 69.785     High  
cufflinks 221.576     High  
cufflinks 208.428     High  
cufflinks 220.359     High  

0 Strain