Gene : Bradi2g51820 B. distachyon v3.1
Defline:  (1 of 2) K04718 - sphingosine kinase (SPHK) Genomic Order:  6229
Name:  ? Bradi2g51820 Secondary Identifier:  ? PAC:32780161
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5129 Brachypodium distachyon pathologic  
Bdistachyon PWY-6483 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g51820 0.5kb upstream 0.5kb upstream 4165 true Bd2: 51180953-51185117 Brachypodium distachyon
Bradi2g51820 0.5kb upstream 0.5kb upstream 500 false Bd2: 51184618-51185117 Brachypodium distachyon
Bradi2g51820 0.5kb downstream 0.5kb downstream 4165 true Bd2: 51180453-51184617 Brachypodium distachyon
Bradi2g51820 0.5kb downstream 0.5kb downstream 500 false Bd2: 51180453-51180952 Brachypodium distachyon
Bradi2g51820 1.0kb upstream 1.0kb upstream 4665 true Bd2: 51180953-51185617 Brachypodium distachyon
Bradi2g51820 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51184618-51185617 Brachypodium distachyon
Bradi2g51820 1.0kb downstream 1.0kb downstream 4665 true Bd2: 51179953-51184617 Brachypodium distachyon
Bradi2g51820 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51179953-51180952 Brachypodium distachyon
Bradi2g51820 2.0kb upstream 2.0kb upstream 5665 true Bd2: 51180953-51186617 Brachypodium distachyon
Bradi2g51820 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51184618-51186617 Brachypodium distachyon
Bradi2g51820 2.0kb downstream 2.0kb downstream 5665 true Bd2: 51178953-51184617 Brachypodium distachyon
Bradi2g51820 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51178953-51180952 Brachypodium distachyon
Bradi2g51820 5.0kb upstream 5.0kb upstream 8665 true Bd2: 51180953-51189617 Brachypodium distachyon
Bradi2g51820 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51184618-51189617 Brachypodium distachyon
Bradi2g51820 5.0kb downstream 5.0kb downstream 8665 true Bd2: 51175953-51184617 Brachypodium distachyon
Bradi2g51820 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51175953-51180952 Brachypodium distachyon
Bradi2g51820 10.0kb upstream 10.0kb upstream 13665 true Bd2: 51180953-51194617 Brachypodium distachyon
Bradi2g51820 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51184618-51194617 Brachypodium distachyon
Bradi2g51820 10.0kb downstream 10.0kb downstream 13665 true Bd2: 51170953-51184617 Brachypodium distachyon
Bradi2g51820 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51170953-51180952 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568835 5269 Grass View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.129       High
cufflinks 0.042     Low  
cufflinks 0.045     Low  
cufflinks 0.041     Low  
cufflinks 0.03     Low  
cufflinks 0.043     Low  
cufflinks 0.041     Low  
cufflinks 0.047     Low  
cufflinks 0.047     Low  
cufflinks 0.044     Low  
cufflinks 0.016     Low Low
cufflinks 0.044     Low  
cufflinks 0.014     Low Low
cufflinks 0.008     Low Low
cufflinks 0.043     Low  
cufflinks 0.088     Low  
cufflinks 0.08     Low  
cufflinks 0.159       High
cufflinks 0.085     Low  
cufflinks 0.054     Low  
cufflinks 0.085     Low  
cufflinks 0.057     Low  
cufflinks 0.038     Low  
cufflinks 0.05     Low  
cufflinks 0.032     Low  
cufflinks 0.045     Low  
cufflinks 0.044     Low  
cufflinks 0.053     Low  
cufflinks 0.045     Low  
cufflinks 0.068     Low  

0 Strain