Gene : Bradi4g19090 B. distachyon v3.1
Defline:  (1 of 1) PTHR12608//PTHR12608:SF5 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  2474
Name:  ? Bradi4g19090 Secondary Identifier:  ? PAC:32789537
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g19090 0.5kb upstream 0.5kb upstream 5689 true Bd4: 21654122-21659810 Brachypodium distachyon
Bradi4g19090 0.5kb upstream 0.5kb upstream 500 false Bd4: 21654122-21654621 Brachypodium distachyon
Bradi4g19090 0.5kb downstream 0.5kb downstream 5689 true Bd4: 21654622-21660310 Brachypodium distachyon
Bradi4g19090 0.5kb downstream 0.5kb downstream 500 false Bd4: 21659811-21660310 Brachypodium distachyon
Bradi4g19090 1.0kb upstream 1.0kb upstream 6189 true Bd4: 21653622-21659810 Brachypodium distachyon
Bradi4g19090 1.0kb upstream 1.0kb upstream 1000 false Bd4: 21653622-21654621 Brachypodium distachyon
Bradi4g19090 1.0kb downstream 1.0kb downstream 6189 true Bd4: 21654622-21660810 Brachypodium distachyon
Bradi4g19090 1.0kb downstream 1.0kb downstream 1000 false Bd4: 21659811-21660810 Brachypodium distachyon
Bradi4g19090 2.0kb upstream 2.0kb upstream 7189 true Bd4: 21652622-21659810 Brachypodium distachyon
Bradi4g19090 2.0kb upstream 2.0kb upstream 2000 false Bd4: 21652622-21654621 Brachypodium distachyon
Bradi4g19090 2.0kb downstream 2.0kb downstream 7189 true Bd4: 21654622-21661810 Brachypodium distachyon
Bradi4g19090 2.0kb downstream 2.0kb downstream 2000 false Bd4: 21659811-21661810 Brachypodium distachyon
Bradi4g19090 5.0kb upstream 5.0kb upstream 10189 true Bd4: 21649622-21659810 Brachypodium distachyon
Bradi4g19090 5.0kb upstream 5.0kb upstream 5000 false Bd4: 21649622-21654621 Brachypodium distachyon
Bradi4g19090 5.0kb downstream 5.0kb downstream 10189 true Bd4: 21654622-21664810 Brachypodium distachyon
Bradi4g19090 5.0kb downstream 5.0kb downstream 5000 false Bd4: 21659811-21664810 Brachypodium distachyon
Bradi4g19090 10.0kb upstream 10.0kb upstream 15189 true Bd4: 21644622-21659810 Brachypodium distachyon
Bradi4g19090 10.0kb upstream 10.0kb upstream 10000 false Bd4: 21644622-21654621 Brachypodium distachyon
Bradi4g19090 10.0kb downstream 10.0kb downstream 15189 true Bd4: 21654622-21669810 Brachypodium distachyon
Bradi4g19090 10.0kb downstream 10.0kb downstream 10000 false Bd4: 21659811-21669810 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585153 5269 Grass View MSA
122047998 5273 Angiosperm View MSA
121345967 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.236        
cufflinks 4.557       High
cufflinks 2.884        
cufflinks 3.77        
cufflinks 1.196       Low
cufflinks 3.993        
cufflinks 4.956       High
cufflinks 1.55       Low
cufflinks 2.92        
cufflinks 2.02        
cufflinks 2.44        
cufflinks 2.715        
cufflinks 2.817        
cufflinks 2.532        
cufflinks 1.407       Low
cufflinks 3.534        
cufflinks 2.99        
cufflinks 3.226        
cufflinks 5.024       High
cufflinks 0.812       Low
cufflinks 3.862        
cufflinks 1.712       Low
cufflinks 1.675       Low
cufflinks 2.774        
cufflinks 4.339        
cufflinks 3.327        
cufflinks 3.499        
cufflinks 3.067        
cufflinks 2.574        
cufflinks 4.302        

0 Strain