Gene : Bradi2g51980 B. distachyon v3.1
Defline:  (1 of 2) PTHR30546//PTHR30546:SF5 - FLAVODOXIN-RELATED PROTEIN WRBA-RELATED Genomic Order:  6247
Name:  ? Bradi2g51980 Secondary Identifier:  ? PAC:32774805
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7279 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g51980 0.5kb upstream 0.5kb upstream 4281 true Bd2: 51287690-51291970 Brachypodium distachyon
Bradi2g51980 0.5kb upstream 0.5kb upstream 500 false Bd2: 51287690-51288189 Brachypodium distachyon
Bradi2g51980 0.5kb downstream 0.5kb downstream 4281 true Bd2: 51288190-51292470 Brachypodium distachyon
Bradi2g51980 0.5kb downstream 0.5kb downstream 500 false Bd2: 51291971-51292470 Brachypodium distachyon
Bradi2g51980 1.0kb upstream 1.0kb upstream 4781 true Bd2: 51287190-51291970 Brachypodium distachyon
Bradi2g51980 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51287190-51288189 Brachypodium distachyon
Bradi2g51980 1.0kb downstream 1.0kb downstream 4781 true Bd2: 51288190-51292970 Brachypodium distachyon
Bradi2g51980 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51291971-51292970 Brachypodium distachyon
Bradi2g51980 2.0kb upstream 2.0kb upstream 5781 true Bd2: 51286190-51291970 Brachypodium distachyon
Bradi2g51980 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51286190-51288189 Brachypodium distachyon
Bradi2g51980 2.0kb downstream 2.0kb downstream 5781 true Bd2: 51288190-51293970 Brachypodium distachyon
Bradi2g51980 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51291971-51293970 Brachypodium distachyon
Bradi2g51980 5.0kb upstream 5.0kb upstream 8781 true Bd2: 51283190-51291970 Brachypodium distachyon
Bradi2g51980 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51283190-51288189 Brachypodium distachyon
Bradi2g51980 5.0kb downstream 5.0kb downstream 8781 true Bd2: 51288190-51296970 Brachypodium distachyon
Bradi2g51980 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51291971-51296970 Brachypodium distachyon
Bradi2g51980 10.0kb upstream 10.0kb upstream 13781 true Bd2: 51278190-51291970 Brachypodium distachyon
Bradi2g51980 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51278190-51288189 Brachypodium distachyon
Bradi2g51980 10.0kb downstream 10.0kb downstream 13781 true Bd2: 51288190-51301970 Brachypodium distachyon
Bradi2g51980 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51291971-51301970 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586954 5269 Grass View MSA
122045410 5273 Angiosperm View MSA
121349391 5274 Embryophyte View MSA
123428089 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.927     High  
cufflinks 25.538     High  
cufflinks 28.567     High  
cufflinks 25.983     High  
cufflinks 13.686     High Low
cufflinks 29.91     High  
cufflinks 26.753     High  
cufflinks 15.256     High Low
cufflinks 22.628     High  
cufflinks 23.077     High  
cufflinks 25.392     High  
cufflinks 34.761     High  
cufflinks 39.159     High  
cufflinks 22.317     High  
cufflinks 46.334     High  
cufflinks 25.406     High  
cufflinks 36.021     High  
cufflinks 55.423     High High
cufflinks 31.329     High  
cufflinks 41.667     High  
cufflinks 49.556     High  
cufflinks 16.997     High Low
cufflinks 13.467     High Low
cufflinks 19.46     High  
cufflinks 26.043     High  
cufflinks 30.983     High  
cufflinks 48.721     High  
cufflinks 28.805     High  
cufflinks 24.567     High  
cufflinks 39.999     High  

0 Strain