Gene : Bradi2g52170 B. distachyon v3.1
Defline:  (1 of 23) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  6270
Name:  ? Bradi2g52170 Secondary Identifier:  ? PAC:32782475
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g52170 0.5kb upstream 0.5kb upstream 2905 true Bd2: 51422061-51424965 Brachypodium distachyon
Bradi2g52170 0.5kb upstream 0.5kb upstream 500 false Bd2: 51424466-51424965 Brachypodium distachyon
Bradi2g52170 0.5kb downstream 0.5kb downstream 2905 true Bd2: 51421561-51424465 Brachypodium distachyon
Bradi2g52170 0.5kb downstream 0.5kb downstream 500 false Bd2: 51421561-51422060 Brachypodium distachyon
Bradi2g52170 1.0kb upstream 1.0kb upstream 3405 true Bd2: 51422061-51425465 Brachypodium distachyon
Bradi2g52170 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51424466-51425465 Brachypodium distachyon
Bradi2g52170 1.0kb downstream 1.0kb downstream 3405 true Bd2: 51421061-51424465 Brachypodium distachyon
Bradi2g52170 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51421061-51422060 Brachypodium distachyon
Bradi2g52170 2.0kb upstream 2.0kb upstream 4405 true Bd2: 51422061-51426465 Brachypodium distachyon
Bradi2g52170 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51424466-51426465 Brachypodium distachyon
Bradi2g52170 2.0kb downstream 2.0kb downstream 4405 true Bd2: 51420061-51424465 Brachypodium distachyon
Bradi2g52170 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51420061-51422060 Brachypodium distachyon
Bradi2g52170 5.0kb upstream 5.0kb upstream 7405 true Bd2: 51422061-51429465 Brachypodium distachyon
Bradi2g52170 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51424466-51429465 Brachypodium distachyon
Bradi2g52170 5.0kb downstream 5.0kb downstream 7405 true Bd2: 51417061-51424465 Brachypodium distachyon
Bradi2g52170 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51417061-51422060 Brachypodium distachyon
Bradi2g52170 10.0kb upstream 10.0kb upstream 12405 true Bd2: 51422061-51434465 Brachypodium distachyon
Bradi2g52170 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51424466-51434465 Brachypodium distachyon
Bradi2g52170 10.0kb downstream 10.0kb downstream 12405 true Bd2: 51412061-51424465 Brachypodium distachyon
Bradi2g52170 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51412061-51422060 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584548 5269 Grass View MSA
122043654 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351271 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.174        
cufflinks 2.398        
cufflinks 2.159        
cufflinks 2.0        
cufflinks 0.451       Low
cufflinks 1.652        
cufflinks 1.699        
cufflinks 1.542        
cufflinks 1.728        
cufflinks 1.182        
cufflinks 1.511        
cufflinks 1.497        
cufflinks 0.756       Low
cufflinks 0.707       Low
cufflinks 0.615       Low
cufflinks 2.126        
cufflinks 1.193        
cufflinks 3.069       High
cufflinks 0.971        
cufflinks 0.479       Low
cufflinks 2.402        
cufflinks 1.749        
cufflinks 1.789        
cufflinks 1.725        
cufflinks 1.722        
cufflinks 1.999        
cufflinks 1.163        
cufflinks 1.815        
cufflinks 1.569        
cufflinks 2.697       High

0 Strain