Gene : Bradi2g52590 B. distachyon v3.1
Defline:  (1 of 4) PTHR23334//PTHR23334:SF25 - CCAAT/ENHANCER BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  6321
Name:  ? Bradi2g52590 Secondary Identifier:  ? PAC:32773569
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g52590 0.5kb upstream 0.5kb upstream 2195 true Bd2: 51706918-51709112 Brachypodium distachyon
Bradi2g52590 0.5kb upstream 0.5kb upstream 500 false Bd2: 51706918-51707417 Brachypodium distachyon
Bradi2g52590 0.5kb downstream 0.5kb downstream 2195 true Bd2: 51707418-51709612 Brachypodium distachyon
Bradi2g52590 0.5kb downstream 0.5kb downstream 500 false Bd2: 51709113-51709612 Brachypodium distachyon
Bradi2g52590 1.0kb upstream 1.0kb upstream 2695 true Bd2: 51706418-51709112 Brachypodium distachyon
Bradi2g52590 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51706418-51707417 Brachypodium distachyon
Bradi2g52590 1.0kb downstream 1.0kb downstream 2695 true Bd2: 51707418-51710112 Brachypodium distachyon
Bradi2g52590 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51709113-51710112 Brachypodium distachyon
Bradi2g52590 2.0kb upstream 2.0kb upstream 3695 true Bd2: 51705418-51709112 Brachypodium distachyon
Bradi2g52590 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51705418-51707417 Brachypodium distachyon
Bradi2g52590 2.0kb downstream 2.0kb downstream 3695 true Bd2: 51707418-51711112 Brachypodium distachyon
Bradi2g52590 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51709113-51711112 Brachypodium distachyon
Bradi2g52590 5.0kb upstream 5.0kb upstream 6695 true Bd2: 51702418-51709112 Brachypodium distachyon
Bradi2g52590 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51702418-51707417 Brachypodium distachyon
Bradi2g52590 5.0kb downstream 5.0kb downstream 6695 true Bd2: 51707418-51714112 Brachypodium distachyon
Bradi2g52590 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51709113-51714112 Brachypodium distachyon
Bradi2g52590 10.0kb upstream 10.0kb upstream 11695 true Bd2: 51697418-51709112 Brachypodium distachyon
Bradi2g52590 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51697418-51707417 Brachypodium distachyon
Bradi2g52590 10.0kb downstream 10.0kb downstream 11695 true Bd2: 51707418-51719112 Brachypodium distachyon
Bradi2g52590 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51709113-51719112 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581802 5269 Grass View MSA
122050154 5273 Angiosperm View MSA
121349674 5274 Embryophyte View MSA
123381395 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.466        
cufflinks 1.254        
cufflinks 2.09        
cufflinks 1.259        
cufflinks 1.096        
cufflinks 2.237        
cufflinks 1.367        
cufflinks 2.254        
cufflinks 3.217        
cufflinks 2.156        
cufflinks 4.061        
cufflinks 2.065        
cufflinks 3.928        
cufflinks 4.49       High
cufflinks 2.511        
cufflinks 1.714        
cufflinks 1.398        
cufflinks 0.099     Low Low
cufflinks 0.687        
cufflinks 0.696        
cufflinks 5.207       High
cufflinks 2.281        
cufflinks 1.866        
cufflinks 2.472        
cufflinks 1.885        
cufflinks 1.687        
cufflinks 14.897     High High
cufflinks 2.167        
cufflinks 2.33        
cufflinks 0.634        

0 Strain