Gene : Bradi2g52777 B. distachyon v3.1
Defline:  (1 of 4) PTHR10535 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Genomic Order:  6345
Name:  ? Bradi2g52777 Secondary Identifier:  ? PAC:32773032
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g52777 0.5kb upstream 0.5kb upstream 2925 true Bd2: 51828944-51831868 Brachypodium distachyon
Bradi2g52777 0.5kb upstream 0.5kb upstream 500 false Bd2: 51831369-51831868 Brachypodium distachyon
Bradi2g52777 0.5kb downstream 0.5kb downstream 2925 true Bd2: 51828444-51831368 Brachypodium distachyon
Bradi2g52777 0.5kb downstream 0.5kb downstream 500 false Bd2: 51828444-51828943 Brachypodium distachyon
Bradi2g52777 1.0kb upstream 1.0kb upstream 3425 true Bd2: 51828944-51832368 Brachypodium distachyon
Bradi2g52777 1.0kb upstream 1.0kb upstream 1000 false Bd2: 51831369-51832368 Brachypodium distachyon
Bradi2g52777 1.0kb downstream 1.0kb downstream 3425 true Bd2: 51827944-51831368 Brachypodium distachyon
Bradi2g52777 1.0kb downstream 1.0kb downstream 1000 false Bd2: 51827944-51828943 Brachypodium distachyon
Bradi2g52777 2.0kb upstream 2.0kb upstream 4425 true Bd2: 51828944-51833368 Brachypodium distachyon
Bradi2g52777 2.0kb upstream 2.0kb upstream 2000 false Bd2: 51831369-51833368 Brachypodium distachyon
Bradi2g52777 2.0kb downstream 2.0kb downstream 4425 true Bd2: 51826944-51831368 Brachypodium distachyon
Bradi2g52777 2.0kb downstream 2.0kb downstream 2000 false Bd2: 51826944-51828943 Brachypodium distachyon
Bradi2g52777 5.0kb upstream 5.0kb upstream 7425 true Bd2: 51828944-51836368 Brachypodium distachyon
Bradi2g52777 5.0kb upstream 5.0kb upstream 5000 false Bd2: 51831369-51836368 Brachypodium distachyon
Bradi2g52777 5.0kb downstream 5.0kb downstream 7425 true Bd2: 51823944-51831368 Brachypodium distachyon
Bradi2g52777 5.0kb downstream 5.0kb downstream 5000 false Bd2: 51823944-51828943 Brachypodium distachyon
Bradi2g52777 10.0kb upstream 10.0kb upstream 12425 true Bd2: 51828944-51841368 Brachypodium distachyon
Bradi2g52777 10.0kb upstream 10.0kb upstream 10000 false Bd2: 51831369-51841368 Brachypodium distachyon
Bradi2g52777 10.0kb downstream 10.0kb downstream 12425 true Bd2: 51818944-51831368 Brachypodium distachyon
Bradi2g52777 10.0kb downstream 10.0kb downstream 10000 false Bd2: 51818944-51828943 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580688 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.776        
cufflinks 6.249        
cufflinks 9.544       High
cufflinks 5.652        
cufflinks 2.88       Low
cufflinks 6.142        
cufflinks 6.379        
cufflinks 4.115        
cufflinks 4.262        
cufflinks 6.97        
cufflinks 3.274       Low
cufflinks 4.959        
cufflinks 3.821        
cufflinks 3.353       Low
cufflinks 3.693        
cufflinks 6.012        
cufflinks 7.441        
cufflinks 10.318       High
cufflinks 6.872        
cufflinks 1.767       Low
cufflinks 10.04       High
cufflinks 6.003        
cufflinks 3.263       Low
cufflinks 4.032        
cufflinks 5.241        
cufflinks 10.998     High High
cufflinks 8.833     High  
cufflinks 10.712       High
cufflinks 7.917        
cufflinks 7.562        

0 Strain