Gene : Bradi4g20338 B. distachyon v3.1
Defline:  (1 of 2) PTHR16092 - SEC3/SYNTAXIN-RELATED Genomic Order:  2584
Name:  ? Bradi4g20338 Secondary Identifier:  ? PAC:32782853
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g20338 0.5kb upstream 0.5kb upstream 14501 true Bd4: 23372987-23387487 Brachypodium distachyon
Bradi4g20338 0.5kb upstream 0.5kb upstream 500 false Bd4: 23386988-23387487 Brachypodium distachyon
Bradi4g20338 0.5kb downstream 0.5kb downstream 14501 true Bd4: 23372487-23386987 Brachypodium distachyon
Bradi4g20338 0.5kb downstream 0.5kb downstream 500 false Bd4: 23372487-23372986 Brachypodium distachyon
Bradi4g20338 1.0kb upstream 1.0kb upstream 15001 true Bd4: 23372987-23387987 Brachypodium distachyon
Bradi4g20338 1.0kb upstream 1.0kb upstream 1000 false Bd4: 23386988-23387987 Brachypodium distachyon
Bradi4g20338 1.0kb downstream 1.0kb downstream 15001 true Bd4: 23371987-23386987 Brachypodium distachyon
Bradi4g20338 1.0kb downstream 1.0kb downstream 1000 false Bd4: 23371987-23372986 Brachypodium distachyon
Bradi4g20338 2.0kb upstream 2.0kb upstream 16001 true Bd4: 23372987-23388987 Brachypodium distachyon
Bradi4g20338 2.0kb upstream 2.0kb upstream 2000 false Bd4: 23386988-23388987 Brachypodium distachyon
Bradi4g20338 2.0kb downstream 2.0kb downstream 16001 true Bd4: 23370987-23386987 Brachypodium distachyon
Bradi4g20338 2.0kb downstream 2.0kb downstream 2000 false Bd4: 23370987-23372986 Brachypodium distachyon
Bradi4g20338 5.0kb upstream 5.0kb upstream 19001 true Bd4: 23372987-23391987 Brachypodium distachyon
Bradi4g20338 5.0kb upstream 5.0kb upstream 5000 false Bd4: 23386988-23391987 Brachypodium distachyon
Bradi4g20338 5.0kb downstream 5.0kb downstream 19001 true Bd4: 23367987-23386987 Brachypodium distachyon
Bradi4g20338 5.0kb downstream 5.0kb downstream 5000 false Bd4: 23367987-23372986 Brachypodium distachyon
Bradi4g20338 10.0kb upstream 10.0kb upstream 24001 true Bd4: 23372987-23396987 Brachypodium distachyon
Bradi4g20338 10.0kb upstream 10.0kb upstream 10000 false Bd4: 23386988-23396987 Brachypodium distachyon
Bradi4g20338 10.0kb downstream 10.0kb downstream 24001 true Bd4: 23362987-23386987 Brachypodium distachyon
Bradi4g20338 10.0kb downstream 10.0kb downstream 10000 false Bd4: 23362987-23372986 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570633 5269 Grass View MSA
122043094 5273 Angiosperm View MSA
121346884 5274 Embryophyte View MSA
123428518 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low  
cufflinks 0.015     Low High
cufflinks 0.015     Low High
cufflinks 0.008     Low  
cufflinks 0.024     Low High
cufflinks 0.01     Low  
cufflinks 0.01     Low  
cufflinks 0.009     Low  
cufflinks 0.01     Low  
cufflinks 0.018     Low High
cufflinks 0.012     Low  
cufflinks 0.007     Low  
cufflinks 0.014     Low High
cufflinks 0.005     Low  
cufflinks 0.006     Low  
cufflinks 0.003     Low Low
cufflinks 0.002     Low Low
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low High
cufflinks 0.002     Low Low
cufflinks 0.015     Low High
cufflinks 0.007     Low  
cufflinks 0.009     Low  
cufflinks 0.01     Low  
cufflinks 0.01     Low  
cufflinks 0.006     Low  
cufflinks 0.012     Low  
cufflinks 0.011     Low  
cufflinks 0.005     Low  

0 Strain