Gene : Bradi2g53170 B. distachyon v3.1
Defline:  (1 of 1) PTHR10314:SF90 - S-SULFOCYSTEINE SYNTHASE, CHLOROPLASTIC-RELATED Genomic Order:  6395
Name:  ? Bradi2g53170 Secondary Identifier:  ? PAC:32773674
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CYSTSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6936 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g53170 0.5kb upstream 0.5kb upstream 3921 true Bd2: 52130591-52134511 Brachypodium distachyon
Bradi2g53170 0.5kb upstream 0.5kb upstream 500 false Bd2: 52134012-52134511 Brachypodium distachyon
Bradi2g53170 0.5kb downstream 0.5kb downstream 3921 true Bd2: 52130091-52134011 Brachypodium distachyon
Bradi2g53170 0.5kb downstream 0.5kb downstream 500 false Bd2: 52130091-52130590 Brachypodium distachyon
Bradi2g53170 1.0kb upstream 1.0kb upstream 4421 true Bd2: 52130591-52135011 Brachypodium distachyon
Bradi2g53170 1.0kb upstream 1.0kb upstream 1000 false Bd2: 52134012-52135011 Brachypodium distachyon
Bradi2g53170 1.0kb downstream 1.0kb downstream 4421 true Bd2: 52129591-52134011 Brachypodium distachyon
Bradi2g53170 1.0kb downstream 1.0kb downstream 1000 false Bd2: 52129591-52130590 Brachypodium distachyon
Bradi2g53170 2.0kb upstream 2.0kb upstream 5421 true Bd2: 52130591-52136011 Brachypodium distachyon
Bradi2g53170 2.0kb upstream 2.0kb upstream 2000 false Bd2: 52134012-52136011 Brachypodium distachyon
Bradi2g53170 2.0kb downstream 2.0kb downstream 5421 true Bd2: 52128591-52134011 Brachypodium distachyon
Bradi2g53170 2.0kb downstream 2.0kb downstream 2000 false Bd2: 52128591-52130590 Brachypodium distachyon
Bradi2g53170 5.0kb upstream 5.0kb upstream 8421 true Bd2: 52130591-52139011 Brachypodium distachyon
Bradi2g53170 5.0kb upstream 5.0kb upstream 5000 false Bd2: 52134012-52139011 Brachypodium distachyon
Bradi2g53170 5.0kb downstream 5.0kb downstream 8421 true Bd2: 52125591-52134011 Brachypodium distachyon
Bradi2g53170 5.0kb downstream 5.0kb downstream 5000 false Bd2: 52125591-52130590 Brachypodium distachyon
Bradi2g53170 10.0kb upstream 10.0kb upstream 13421 true Bd2: 52130591-52144011 Brachypodium distachyon
Bradi2g53170 10.0kb upstream 10.0kb upstream 10000 false Bd2: 52134012-52144011 Brachypodium distachyon
Bradi2g53170 10.0kb downstream 10.0kb downstream 13421 true Bd2: 52120591-52134011 Brachypodium distachyon
Bradi2g53170 10.0kb downstream 10.0kb downstream 10000 false Bd2: 52120591-52130590 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578036 5269 Grass View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.445        
cufflinks 19.192     High High
cufflinks 15.297     High High
cufflinks 13.806     High  
cufflinks 5.404        
cufflinks 14.606     High  
cufflinks 18.103     High High
cufflinks 10.446     High  
cufflinks 10.528     High  
cufflinks 11.153     High  
cufflinks 6.619        
cufflinks 10.442     High  
cufflinks 3.804       Low
cufflinks 5.019        
cufflinks 4.951        
cufflinks 18.028     High High
cufflinks 12.023     High  
cufflinks 4.979        
cufflinks 9.678        
cufflinks 4.174       Low
cufflinks 5.824        
cufflinks 12.869     High  
cufflinks 7.308        
cufflinks 8.26        
cufflinks 13.615     High  
cufflinks 13.474     High  
cufflinks 2.604       Low
cufflinks 10.697        
cufflinks 10.956     High  
cufflinks 14.026     High  

0 Strain