Gene : Bradi2g53690 B. distachyon v3.1
Defline:  (1 of 28) PF03195 - Protein of unknown function DUF260 (DUF260) Genomic Order:  6460
Name:  ? Bradi2g53690 Secondary Identifier:  ? PAC:32775007
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g53690 0.5kb upstream 0.5kb upstream 3527 true Bd2: 52585067-52588593 Brachypodium distachyon
Bradi2g53690 0.5kb upstream 0.5kb upstream 500 false Bd2: 52585067-52585566 Brachypodium distachyon
Bradi2g53690 0.5kb downstream 0.5kb downstream 3527 true Bd2: 52585567-52589093 Brachypodium distachyon
Bradi2g53690 0.5kb downstream 0.5kb downstream 500 false Bd2: 52588594-52589093 Brachypodium distachyon
Bradi2g53690 1.0kb upstream 1.0kb upstream 4027 true Bd2: 52584567-52588593 Brachypodium distachyon
Bradi2g53690 1.0kb upstream 1.0kb upstream 1000 false Bd2: 52584567-52585566 Brachypodium distachyon
Bradi2g53690 1.0kb downstream 1.0kb downstream 4027 true Bd2: 52585567-52589593 Brachypodium distachyon
Bradi2g53690 1.0kb downstream 1.0kb downstream 1000 false Bd2: 52588594-52589593 Brachypodium distachyon
Bradi2g53690 2.0kb upstream 2.0kb upstream 5027 true Bd2: 52583567-52588593 Brachypodium distachyon
Bradi2g53690 2.0kb upstream 2.0kb upstream 2000 false Bd2: 52583567-52585566 Brachypodium distachyon
Bradi2g53690 2.0kb downstream 2.0kb downstream 5027 true Bd2: 52585567-52590593 Brachypodium distachyon
Bradi2g53690 2.0kb downstream 2.0kb downstream 2000 false Bd2: 52588594-52590593 Brachypodium distachyon
Bradi2g53690 5.0kb upstream 5.0kb upstream 8027 true Bd2: 52580567-52588593 Brachypodium distachyon
Bradi2g53690 5.0kb upstream 5.0kb upstream 5000 false Bd2: 52580567-52585566 Brachypodium distachyon
Bradi2g53690 5.0kb downstream 5.0kb downstream 8027 true Bd2: 52585567-52593593 Brachypodium distachyon
Bradi2g53690 5.0kb downstream 5.0kb downstream 5000 false Bd2: 52588594-52593593 Brachypodium distachyon
Bradi2g53690 10.0kb upstream 10.0kb upstream 13027 true Bd2: 52575567-52588593 Brachypodium distachyon
Bradi2g53690 10.0kb upstream 10.0kb upstream 10000 false Bd2: 52575567-52585566 Brachypodium distachyon
Bradi2g53690 10.0kb downstream 10.0kb downstream 13027 true Bd2: 52585567-52598593 Brachypodium distachyon
Bradi2g53690 10.0kb downstream 10.0kb downstream 10000 false Bd2: 52588594-52598593 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572746 5269 Grass View MSA
122043702 5273 Angiosperm View MSA
121351035 5274 Embryophyte View MSA
123381985 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.177        
cufflinks 0.159        
cufflinks 0.216        
cufflinks 0.193        
cufflinks 0.164        
cufflinks 0.157        
cufflinks 0.216        
cufflinks 0.158        
cufflinks 0.133        
cufflinks 0.295        
cufflinks 0.023     Low Low
cufflinks 0.17        
cufflinks 0.085        
cufflinks 0.052     Low Low
cufflinks 0.133        
cufflinks 0.174        
cufflinks 0.156     Low  
cufflinks 0.81       High
cufflinks 0.088     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.413        
cufflinks 0.132        
cufflinks 0.127        
cufflinks 0.16        
cufflinks 0.253        
cufflinks 0.234        
cufflinks 0.008     Low Low
cufflinks 0.244        
cufflinks 0.306        
cufflinks 0.425        

0 Strain