Gene : Bradi2g54010 B. distachyon v3.1
Defline:  (1 of 47) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  6494
Name:  ? Bradi2g54010 Secondary Identifier:  ? PAC:32770958
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g54010 0.5kb upstream 0.5kb upstream 6118 true Bd2: 52776420-52782537 Brachypodium distachyon
Bradi2g54010 0.5kb upstream 0.5kb upstream 500 false Bd2: 52776420-52776919 Brachypodium distachyon
Bradi2g54010 0.5kb downstream 0.5kb downstream 6118 true Bd2: 52776920-52783037 Brachypodium distachyon
Bradi2g54010 0.5kb downstream 0.5kb downstream 500 false Bd2: 52782538-52783037 Brachypodium distachyon
Bradi2g54010 1.0kb upstream 1.0kb upstream 6618 true Bd2: 52775920-52782537 Brachypodium distachyon
Bradi2g54010 1.0kb upstream 1.0kb upstream 1000 false Bd2: 52775920-52776919 Brachypodium distachyon
Bradi2g54010 1.0kb downstream 1.0kb downstream 6618 true Bd2: 52776920-52783537 Brachypodium distachyon
Bradi2g54010 1.0kb downstream 1.0kb downstream 1000 false Bd2: 52782538-52783537 Brachypodium distachyon
Bradi2g54010 2.0kb upstream 2.0kb upstream 7618 true Bd2: 52774920-52782537 Brachypodium distachyon
Bradi2g54010 2.0kb upstream 2.0kb upstream 2000 false Bd2: 52774920-52776919 Brachypodium distachyon
Bradi2g54010 2.0kb downstream 2.0kb downstream 7618 true Bd2: 52776920-52784537 Brachypodium distachyon
Bradi2g54010 2.0kb downstream 2.0kb downstream 2000 false Bd2: 52782538-52784537 Brachypodium distachyon
Bradi2g54010 5.0kb upstream 5.0kb upstream 10618 true Bd2: 52771920-52782537 Brachypodium distachyon
Bradi2g54010 5.0kb upstream 5.0kb upstream 5000 false Bd2: 52771920-52776919 Brachypodium distachyon
Bradi2g54010 5.0kb downstream 5.0kb downstream 10618 true Bd2: 52776920-52787537 Brachypodium distachyon
Bradi2g54010 5.0kb downstream 5.0kb downstream 5000 false Bd2: 52782538-52787537 Brachypodium distachyon
Bradi2g54010 10.0kb upstream 10.0kb upstream 15618 true Bd2: 52766920-52782537 Brachypodium distachyon
Bradi2g54010 10.0kb upstream 10.0kb upstream 10000 false Bd2: 52766920-52776919 Brachypodium distachyon
Bradi2g54010 10.0kb downstream 10.0kb downstream 15618 true Bd2: 52776920-52792537 Brachypodium distachyon
Bradi2g54010 10.0kb downstream 10.0kb downstream 10000 false Bd2: 52782538-52792537 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571564 5269 Grass View MSA
122051004 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121312244 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.367       High
cufflinks 0.082     Low Low
cufflinks 0.187        
cufflinks 0.145        
cufflinks 1.08        
cufflinks 0.081     Low Low
cufflinks 0.056     Low Low
cufflinks 0.233        
cufflinks 0.116       Low
cufflinks 0.368        
cufflinks 0.786        
cufflinks 0.723        
cufflinks 0.171        
cufflinks 0.482        
cufflinks 2.343       High
cufflinks 0.129        
cufflinks 0.342        
cufflinks 3.034       High
cufflinks 0.817        
cufflinks 1.321       High
cufflinks 0.093     Low Low
cufflinks 0.313        
cufflinks 0.235        
cufflinks 0.158        
cufflinks 0.074     Low Low
cufflinks 0.188        
cufflinks 0.64        
cufflinks 0.279        
cufflinks 0.339        
cufflinks 0.314        

0 Strain