Gene : Bradi2g49640 B. distachyon v3.1
Defline:  (1 of 3) K07151 - dolichyl-diphosphooligosaccharide--protein glycosyltransferase (STT3) Genomic Order:  5959
Name:  ? Bradi2g49640 Secondary Identifier:  ? PAC:32771711
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g49640 0.5kb upstream 0.5kb upstream 6749 true Bd2: 49467043-49473791 Brachypodium distachyon
Bradi2g49640 0.5kb upstream 0.5kb upstream 500 false Bd2: 49467043-49467542 Brachypodium distachyon
Bradi2g49640 0.5kb downstream 0.5kb downstream 6749 true Bd2: 49467543-49474291 Brachypodium distachyon
Bradi2g49640 0.5kb downstream 0.5kb downstream 500 false Bd2: 49473792-49474291 Brachypodium distachyon
Bradi2g49640 1.0kb upstream 1.0kb upstream 7249 true Bd2: 49466543-49473791 Brachypodium distachyon
Bradi2g49640 1.0kb upstream 1.0kb upstream 1000 false Bd2: 49466543-49467542 Brachypodium distachyon
Bradi2g49640 1.0kb downstream 1.0kb downstream 7249 true Bd2: 49467543-49474791 Brachypodium distachyon
Bradi2g49640 1.0kb downstream 1.0kb downstream 1000 false Bd2: 49473792-49474791 Brachypodium distachyon
Bradi2g49640 2.0kb upstream 2.0kb upstream 8249 true Bd2: 49465543-49473791 Brachypodium distachyon
Bradi2g49640 2.0kb upstream 2.0kb upstream 2000 false Bd2: 49465543-49467542 Brachypodium distachyon
Bradi2g49640 2.0kb downstream 2.0kb downstream 8249 true Bd2: 49467543-49475791 Brachypodium distachyon
Bradi2g49640 2.0kb downstream 2.0kb downstream 2000 false Bd2: 49473792-49475791 Brachypodium distachyon
Bradi2g49640 5.0kb upstream 5.0kb upstream 11249 true Bd2: 49462543-49473791 Brachypodium distachyon
Bradi2g49640 5.0kb upstream 5.0kb upstream 5000 false Bd2: 49462543-49467542 Brachypodium distachyon
Bradi2g49640 5.0kb downstream 5.0kb downstream 11249 true Bd2: 49467543-49478791 Brachypodium distachyon
Bradi2g49640 5.0kb downstream 5.0kb downstream 5000 false Bd2: 49473792-49478791 Brachypodium distachyon
Bradi2g49640 10.0kb upstream 10.0kb upstream 16249 true Bd2: 49457543-49473791 Brachypodium distachyon
Bradi2g49640 10.0kb upstream 10.0kb upstream 10000 false Bd2: 49457543-49467542 Brachypodium distachyon
Bradi2g49640 10.0kb downstream 10.0kb downstream 16249 true Bd2: 49467543-49483791 Brachypodium distachyon
Bradi2g49640 10.0kb downstream 10.0kb downstream 10000 false Bd2: 49473792-49483791 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041451 5273 Angiosperm View MSA
124588615 5269 Grass View MSA
121345608 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.432        
cufflinks 1.777        
cufflinks 1.382        
cufflinks 1.311        
cufflinks 0.381        
cufflinks 1.49        
cufflinks 1.439        
cufflinks 0.903        
cufflinks 1.071        
cufflinks 0.701        
cufflinks 0.141       Low
cufflinks 1.088        
cufflinks 0.106       Low
cufflinks 0.039     Low Low
cufflinks 0.358        
cufflinks 1.86        
cufflinks 0.866        
cufflinks 2.609       High
cufflinks 1.068        
cufflinks 0.041     Low Low
cufflinks 1.439        
cufflinks 1.376        
cufflinks 0.83        
cufflinks 0.957        
cufflinks 1.22        
cufflinks 1.369        
cufflinks 0.08     Low Low
cufflinks 1.106        
cufflinks 1.117        
cufflinks 2.127       High

0 Strain