Gene : Bradi2g49670 B. distachyon v3.1
Defline:  (1 of 1) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  5962
Name:  ? Bradi2g49670 Secondary Identifier:  ? PAC:32774327
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7101 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g49670 0.5kb upstream 0.5kb upstream 4405 true Bd2: 49482225-49486629 Brachypodium distachyon
Bradi2g49670 0.5kb upstream 0.5kb upstream 500 false Bd2: 49486130-49486629 Brachypodium distachyon
Bradi2g49670 0.5kb downstream 0.5kb downstream 4405 true Bd2: 49481725-49486129 Brachypodium distachyon
Bradi2g49670 0.5kb downstream 0.5kb downstream 500 false Bd2: 49481725-49482224 Brachypodium distachyon
Bradi2g49670 1.0kb upstream 1.0kb upstream 4905 true Bd2: 49482225-49487129 Brachypodium distachyon
Bradi2g49670 1.0kb upstream 1.0kb upstream 1000 false Bd2: 49486130-49487129 Brachypodium distachyon
Bradi2g49670 1.0kb downstream 1.0kb downstream 4905 true Bd2: 49481225-49486129 Brachypodium distachyon
Bradi2g49670 1.0kb downstream 1.0kb downstream 1000 false Bd2: 49481225-49482224 Brachypodium distachyon
Bradi2g49670 2.0kb upstream 2.0kb upstream 5905 true Bd2: 49482225-49488129 Brachypodium distachyon
Bradi2g49670 2.0kb upstream 2.0kb upstream 2000 false Bd2: 49486130-49488129 Brachypodium distachyon
Bradi2g49670 2.0kb downstream 2.0kb downstream 5905 true Bd2: 49480225-49486129 Brachypodium distachyon
Bradi2g49670 2.0kb downstream 2.0kb downstream 2000 false Bd2: 49480225-49482224 Brachypodium distachyon
Bradi2g49670 5.0kb upstream 5.0kb upstream 8905 true Bd2: 49482225-49491129 Brachypodium distachyon
Bradi2g49670 5.0kb upstream 5.0kb upstream 5000 false Bd2: 49486130-49491129 Brachypodium distachyon
Bradi2g49670 5.0kb downstream 5.0kb downstream 8905 true Bd2: 49477225-49486129 Brachypodium distachyon
Bradi2g49670 5.0kb downstream 5.0kb downstream 5000 false Bd2: 49477225-49482224 Brachypodium distachyon
Bradi2g49670 10.0kb upstream 10.0kb upstream 13905 true Bd2: 49482225-49496129 Brachypodium distachyon
Bradi2g49670 10.0kb upstream 10.0kb upstream 10000 false Bd2: 49486130-49496129 Brachypodium distachyon
Bradi2g49670 10.0kb downstream 10.0kb downstream 13905 true Bd2: 49472225-49486129 Brachypodium distachyon
Bradi2g49670 10.0kb downstream 10.0kb downstream 10000 false Bd2: 49472225-49482224 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.142       High
cufflinks 0.027     Low  
cufflinks 0.027     Low  
cufflinks 0.043     Low  
cufflinks 0.068     Low  
cufflinks 0.035     Low  
cufflinks 0.085        
cufflinks 0.053     Low  
cufflinks 0.048     Low  
cufflinks 0.023     Low  
cufflinks 0.014     Low  
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.029     Low  
cufflinks 0.052     Low  
cufflinks 0.024     Low  
cufflinks 0.394       High
cufflinks 0.013     Low  
cufflinks 0.02     Low  
cufflinks 0.36       High
cufflinks 0.025     Low  
cufflinks 0.041     Low  
cufflinks 0.047     Low  
cufflinks 0.078     Low  
cufflinks 0.015     Low  
cufflinks 0.012     Low  
cufflinks 0.045     Low  
cufflinks 0.032     Low  
cufflinks 0.074     Low  

0 Strain