Gene : Bradi2g50040 B. distachyon v3.1
Defline:  (1 of 1) 2.4.1.182 - Lipid-A-disaccharide synthase Genomic Order:  6009
Name:  ? Bradi2g50040 Secondary Identifier:  ? PAC:32779149
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon NAGLIPASYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g50040 0.5kb upstream 0.5kb upstream 7888 true Bd2: 49777461-49785348 Brachypodium distachyon
Bradi2g50040 0.5kb upstream 0.5kb upstream 500 false Bd2: 49784849-49785348 Brachypodium distachyon
Bradi2g50040 0.5kb downstream 0.5kb downstream 7888 true Bd2: 49776961-49784848 Brachypodium distachyon
Bradi2g50040 0.5kb downstream 0.5kb downstream 500 false Bd2: 49776961-49777460 Brachypodium distachyon
Bradi2g50040 1.0kb upstream 1.0kb upstream 8388 true Bd2: 49777461-49785848 Brachypodium distachyon
Bradi2g50040 1.0kb upstream 1.0kb upstream 1000 false Bd2: 49784849-49785848 Brachypodium distachyon
Bradi2g50040 1.0kb downstream 1.0kb downstream 8388 true Bd2: 49776461-49784848 Brachypodium distachyon
Bradi2g50040 1.0kb downstream 1.0kb downstream 1000 false Bd2: 49776461-49777460 Brachypodium distachyon
Bradi2g50040 2.0kb upstream 2.0kb upstream 9388 true Bd2: 49777461-49786848 Brachypodium distachyon
Bradi2g50040 2.0kb upstream 2.0kb upstream 2000 false Bd2: 49784849-49786848 Brachypodium distachyon
Bradi2g50040 2.0kb downstream 2.0kb downstream 9388 true Bd2: 49775461-49784848 Brachypodium distachyon
Bradi2g50040 2.0kb downstream 2.0kb downstream 2000 false Bd2: 49775461-49777460 Brachypodium distachyon
Bradi2g50040 5.0kb upstream 5.0kb upstream 12388 true Bd2: 49777461-49789848 Brachypodium distachyon
Bradi2g50040 5.0kb upstream 5.0kb upstream 5000 false Bd2: 49784849-49789848 Brachypodium distachyon
Bradi2g50040 5.0kb downstream 5.0kb downstream 12388 true Bd2: 49772461-49784848 Brachypodium distachyon
Bradi2g50040 5.0kb downstream 5.0kb downstream 5000 false Bd2: 49772461-49777460 Brachypodium distachyon
Bradi2g50040 10.0kb upstream 10.0kb upstream 17388 true Bd2: 49777461-49794848 Brachypodium distachyon
Bradi2g50040 10.0kb upstream 10.0kb upstream 10000 false Bd2: 49784849-49794848 Brachypodium distachyon
Bradi2g50040 10.0kb downstream 10.0kb downstream 17388 true Bd2: 49767461-49784848 Brachypodium distachyon
Bradi2g50040 10.0kb downstream 10.0kb downstream 10000 false Bd2: 49767461-49777460 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573921 5269 Grass View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.257       Low
cufflinks 0.836       High
cufflinks 0.64        
cufflinks 0.9       High
cufflinks 0.175       Low
cufflinks 0.655        
cufflinks 0.641        
cufflinks 0.476        
cufflinks 0.624        
cufflinks 0.386        
cufflinks 0.633        
cufflinks 0.482        
cufflinks 0.369        
cufflinks 0.374        
cufflinks 0.299        
cufflinks 0.53        
cufflinks 0.304        
cufflinks 0.957       High
cufflinks 0.216       Low
cufflinks 0.171       Low
cufflinks 0.364        
cufflinks 0.485        
cufflinks 0.414        
cufflinks 0.538        
cufflinks 0.679        
cufflinks 0.487        
cufflinks 0.527        
cufflinks 0.545        
cufflinks 0.534        
cufflinks 0.499        

0 Strain