Gene : Bradi4g16620 B. distachyon v3.1
Defline:  (1 of 2) PTHR10359//PTHR10359:SF29 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // SUBFAMILY NOT NAMED Genomic Order:  2229
Name:  ? Bradi4g16620 Secondary Identifier:  ? PAC:32790684
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g16620 0.5kb upstream 0.5kb upstream 15992 true Bd4: 17468087-17484078 Brachypodium distachyon
Bradi4g16620 0.5kb upstream 0.5kb upstream 500 false Bd4: 17468087-17468586 Brachypodium distachyon
Bradi4g16620 0.5kb downstream 0.5kb downstream 15992 true Bd4: 17468587-17484578 Brachypodium distachyon
Bradi4g16620 0.5kb downstream 0.5kb downstream 500 false Bd4: 17484079-17484578 Brachypodium distachyon
Bradi4g16620 1.0kb upstream 1.0kb upstream 16492 true Bd4: 17467587-17484078 Brachypodium distachyon
Bradi4g16620 1.0kb upstream 1.0kb upstream 1000 false Bd4: 17467587-17468586 Brachypodium distachyon
Bradi4g16620 1.0kb downstream 1.0kb downstream 16492 true Bd4: 17468587-17485078 Brachypodium distachyon
Bradi4g16620 1.0kb downstream 1.0kb downstream 1000 false Bd4: 17484079-17485078 Brachypodium distachyon
Bradi4g16620 2.0kb upstream 2.0kb upstream 17492 true Bd4: 17466587-17484078 Brachypodium distachyon
Bradi4g16620 2.0kb upstream 2.0kb upstream 2000 false Bd4: 17466587-17468586 Brachypodium distachyon
Bradi4g16620 2.0kb downstream 2.0kb downstream 17492 true Bd4: 17468587-17486078 Brachypodium distachyon
Bradi4g16620 2.0kb downstream 2.0kb downstream 2000 false Bd4: 17484079-17486078 Brachypodium distachyon
Bradi4g16620 5.0kb upstream 5.0kb upstream 20492 true Bd4: 17463587-17484078 Brachypodium distachyon
Bradi4g16620 5.0kb upstream 5.0kb upstream 5000 false Bd4: 17463587-17468586 Brachypodium distachyon
Bradi4g16620 5.0kb downstream 5.0kb downstream 20492 true Bd4: 17468587-17489078 Brachypodium distachyon
Bradi4g16620 5.0kb downstream 5.0kb downstream 5000 false Bd4: 17484079-17489078 Brachypodium distachyon
Bradi4g16620 10.0kb upstream 10.0kb upstream 25492 true Bd4: 17458587-17484078 Brachypodium distachyon
Bradi4g16620 10.0kb upstream 10.0kb upstream 10000 false Bd4: 17458587-17468586 Brachypodium distachyon
Bradi4g16620 10.0kb downstream 10.0kb downstream 25492 true Bd4: 17468587-17494078 Brachypodium distachyon
Bradi4g16620 10.0kb downstream 10.0kb downstream 10000 false Bd4: 17484079-17494078 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589850 5269 Grass View MSA
122044419 5273 Angiosperm View MSA
121348532 5274 Embryophyte View MSA
123428690 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.055     Low  
cufflinks 0.2       High
cufflinks 0.183       High
cufflinks 0.109        
cufflinks 0.03     Low Low
cufflinks 0.12        
cufflinks 0.154        
cufflinks 0.07     Low  
cufflinks 0.136        
cufflinks 0.057     Low  
cufflinks 0.086        
cufflinks 0.145        
cufflinks 0.086        
cufflinks 0.066        
cufflinks 0.04     Low  
cufflinks 0.106        
cufflinks 0.051     Low  
cufflinks 0.106     Low  
cufflinks 0.083     Low  
cufflinks 0.021     Low Low
cufflinks 0.103     Low  
cufflinks 0.157        
cufflinks 0.125        
cufflinks 0.087     Low  
cufflinks 0.111        
cufflinks 0.131        
cufflinks 0.11        
cufflinks 0.13        
cufflinks 0.195       High
cufflinks 0.15        

0 Strain