Gene : Bradi4g16597 B. distachyon v3.1
Defline:  (1 of 57) PF00098 - Zinc knuckle Genomic Order:  2222
Name:  ? Bradi4g16597 Secondary Identifier:  ? PAC:32790483
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g16597 0.5kb upstream 0.5kb upstream 4199 true Bd4: 17439929-17444127 Brachypodium distachyon
Bradi4g16597 0.5kb upstream 0.5kb upstream 500 false Bd4: 17443628-17444127 Brachypodium distachyon
Bradi4g16597 0.5kb downstream 0.5kb downstream 4199 true Bd4: 17439429-17443627 Brachypodium distachyon
Bradi4g16597 0.5kb downstream 0.5kb downstream 500 false Bd4: 17439429-17439928 Brachypodium distachyon
Bradi4g16597 1.0kb upstream 1.0kb upstream 4699 true Bd4: 17439929-17444627 Brachypodium distachyon
Bradi4g16597 1.0kb upstream 1.0kb upstream 1000 false Bd4: 17443628-17444627 Brachypodium distachyon
Bradi4g16597 1.0kb downstream 1.0kb downstream 4699 true Bd4: 17438929-17443627 Brachypodium distachyon
Bradi4g16597 1.0kb downstream 1.0kb downstream 1000 false Bd4: 17438929-17439928 Brachypodium distachyon
Bradi4g16597 2.0kb upstream 2.0kb upstream 5699 true Bd4: 17439929-17445627 Brachypodium distachyon
Bradi4g16597 2.0kb upstream 2.0kb upstream 2000 false Bd4: 17443628-17445627 Brachypodium distachyon
Bradi4g16597 2.0kb downstream 2.0kb downstream 5699 true Bd4: 17437929-17443627 Brachypodium distachyon
Bradi4g16597 2.0kb downstream 2.0kb downstream 2000 false Bd4: 17437929-17439928 Brachypodium distachyon
Bradi4g16597 5.0kb upstream 5.0kb upstream 8699 true Bd4: 17439929-17448627 Brachypodium distachyon
Bradi4g16597 5.0kb upstream 5.0kb upstream 5000 false Bd4: 17443628-17448627 Brachypodium distachyon
Bradi4g16597 5.0kb downstream 5.0kb downstream 8699 true Bd4: 17434929-17443627 Brachypodium distachyon
Bradi4g16597 5.0kb downstream 5.0kb downstream 5000 false Bd4: 17434929-17439928 Brachypodium distachyon
Bradi4g16597 10.0kb upstream 10.0kb upstream 13699 true Bd4: 17439929-17453627 Brachypodium distachyon
Bradi4g16597 10.0kb upstream 10.0kb upstream 10000 false Bd4: 17443628-17453627 Brachypodium distachyon
Bradi4g16597 10.0kb downstream 10.0kb downstream 13699 true Bd4: 17429929-17443627 Brachypodium distachyon
Bradi4g16597 10.0kb downstream 10.0kb downstream 10000 false Bd4: 17429929-17439928 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122006147 5273 Angiosperm View MSA
124590470 5269 Grass View MSA
121276265 5274 Embryophyte View MSA
123314552 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low Low
cufflinks 0.19       High
cufflinks 0.177        
cufflinks 0.099     Low  
cufflinks 0.073     Low  
cufflinks 0.104        
cufflinks 0.158        
cufflinks 0.145        
cufflinks 0.164        
cufflinks 0.2       High
cufflinks 0.106        
cufflinks 0.171        
cufflinks 0.092        
cufflinks 0.126        
cufflinks 0.07     Low  
cufflinks 0.123        
cufflinks 0.146     Low  
cufflinks 0.103     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083     Low  
cufflinks 0.012     Low Low
cufflinks 0.139        
cufflinks 0.168        
cufflinks 0.104     Low  
cufflinks 0.112        
cufflinks 0.07     Low  
cufflinks 0.162        
cufflinks 0.144        
cufflinks 0.215       High
cufflinks 0.074     Low  

0 Strain