Gene : Bradi2g51160 B. distachyon v3.1
Defline:  (1 of 3) PTHR11999//PTHR11999:SF96 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE // SUBFAMILY NOT NAMED Genomic Order:  6147
Name:  ? Bradi2g51160 Secondary Identifier:  ? PAC:32777463
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6802 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g51160 0.5kb upstream 0.5kb upstream 1996 true Bd2: 50580173-50582168 Brachypodium distachyon
Bradi2g51160 0.5kb upstream 0.5kb upstream 500 false Bd2: 50581669-50582168 Brachypodium distachyon
Bradi2g51160 0.5kb downstream 0.5kb downstream 1996 true Bd2: 50579673-50581668 Brachypodium distachyon
Bradi2g51160 0.5kb downstream 0.5kb downstream 500 false Bd2: 50579673-50580172 Brachypodium distachyon
Bradi2g51160 1.0kb upstream 1.0kb upstream 2496 true Bd2: 50580173-50582668 Brachypodium distachyon
Bradi2g51160 1.0kb upstream 1.0kb upstream 1000 false Bd2: 50581669-50582668 Brachypodium distachyon
Bradi2g51160 1.0kb downstream 1.0kb downstream 2496 true Bd2: 50579173-50581668 Brachypodium distachyon
Bradi2g51160 1.0kb downstream 1.0kb downstream 1000 false Bd2: 50579173-50580172 Brachypodium distachyon
Bradi2g51160 2.0kb upstream 2.0kb upstream 3496 true Bd2: 50580173-50583668 Brachypodium distachyon
Bradi2g51160 2.0kb upstream 2.0kb upstream 2000 false Bd2: 50581669-50583668 Brachypodium distachyon
Bradi2g51160 2.0kb downstream 2.0kb downstream 3496 true Bd2: 50578173-50581668 Brachypodium distachyon
Bradi2g51160 2.0kb downstream 2.0kb downstream 2000 false Bd2: 50578173-50580172 Brachypodium distachyon
Bradi2g51160 5.0kb upstream 5.0kb upstream 6496 true Bd2: 50580173-50586668 Brachypodium distachyon
Bradi2g51160 5.0kb upstream 5.0kb upstream 5000 false Bd2: 50581669-50586668 Brachypodium distachyon
Bradi2g51160 5.0kb downstream 5.0kb downstream 6496 true Bd2: 50575173-50581668 Brachypodium distachyon
Bradi2g51160 5.0kb downstream 5.0kb downstream 5000 false Bd2: 50575173-50580172 Brachypodium distachyon
Bradi2g51160 10.0kb upstream 10.0kb upstream 11496 true Bd2: 50580173-50591668 Brachypodium distachyon
Bradi2g51160 10.0kb upstream 10.0kb upstream 10000 false Bd2: 50581669-50591668 Brachypodium distachyon
Bradi2g51160 10.0kb downstream 10.0kb downstream 11496 true Bd2: 50570173-50581668 Brachypodium distachyon
Bradi2g51160 10.0kb downstream 10.0kb downstream 10000 false Bd2: 50570173-50580172 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584380 5269 Grass View MSA
122049990 5273 Angiosperm View MSA
121346874 5274 Embryophyte View MSA
123423954 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.337       High
cufflinks 0.06     Low  
cufflinks 0.083     Low  
cufflinks 0.02     Low Low
cufflinks 0.181        
cufflinks 0.055     Low  
cufflinks 0.093        
cufflinks 0.058     Low  
cufflinks 0.084     Low  
cufflinks 0.154        
cufflinks 0.045     Low  
cufflinks 0.071     Low  
cufflinks 0.069        
cufflinks 0.054     Low  
cufflinks 0.263       High
cufflinks 0.094        
cufflinks 0.057     Low  
cufflinks 0.681       High
cufflinks 0.265       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.144        
cufflinks 0.121     Low  
cufflinks 0.065     Low  
cufflinks 0.038     Low  
cufflinks 0.065     Low  
cufflinks 0.133        
cufflinks 0.25       High
cufflinks 0.099     Low  
cufflinks 0.105     Low  
cufflinks 0.016     Low Low

0 Strain