Gene : Bradi2g57530 B. distachyon v3.1
Defline:  (1 of 1) PTHR30560//PTHR30560:SF2 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE Genomic Order:  6934
Name:  ? Bradi2g57530 Secondary Identifier:  ? PAC:32776866
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g57530 0.5kb upstream 0.5kb upstream 3025 true Bd2: 55460102-55463126 Brachypodium distachyon
Bradi2g57530 0.5kb upstream 0.5kb upstream 500 false Bd2: 55462627-55463126 Brachypodium distachyon
Bradi2g57530 0.5kb downstream 0.5kb downstream 3025 true Bd2: 55459602-55462626 Brachypodium distachyon
Bradi2g57530 0.5kb downstream 0.5kb downstream 500 false Bd2: 55459602-55460101 Brachypodium distachyon
Bradi2g57530 1.0kb upstream 1.0kb upstream 3525 true Bd2: 55460102-55463626 Brachypodium distachyon
Bradi2g57530 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55462627-55463626 Brachypodium distachyon
Bradi2g57530 1.0kb downstream 1.0kb downstream 3525 true Bd2: 55459102-55462626 Brachypodium distachyon
Bradi2g57530 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55459102-55460101 Brachypodium distachyon
Bradi2g57530 2.0kb upstream 2.0kb upstream 4525 true Bd2: 55460102-55464626 Brachypodium distachyon
Bradi2g57530 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55462627-55464626 Brachypodium distachyon
Bradi2g57530 2.0kb downstream 2.0kb downstream 4525 true Bd2: 55458102-55462626 Brachypodium distachyon
Bradi2g57530 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55458102-55460101 Brachypodium distachyon
Bradi2g57530 5.0kb upstream 5.0kb upstream 7525 true Bd2: 55460102-55467626 Brachypodium distachyon
Bradi2g57530 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55462627-55467626 Brachypodium distachyon
Bradi2g57530 5.0kb downstream 5.0kb downstream 7525 true Bd2: 55455102-55462626 Brachypodium distachyon
Bradi2g57530 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55455102-55460101 Brachypodium distachyon
Bradi2g57530 10.0kb upstream 10.0kb upstream 12525 true Bd2: 55460102-55472626 Brachypodium distachyon
Bradi2g57530 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55462627-55472626 Brachypodium distachyon
Bradi2g57530 10.0kb downstream 10.0kb downstream 12525 true Bd2: 55450102-55462626 Brachypodium distachyon
Bradi2g57530 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55450102-55460101 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580279 5269 Grass View MSA
122048682 5273 Angiosperm View MSA
121348209 5274 Embryophyte View MSA
123380773 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.417     High  
cufflinks 28.748     High  
cufflinks 28.794     High  
cufflinks 42.274     High High
cufflinks 25.365     High  
cufflinks 17.193     High  
cufflinks 23.596     High  
cufflinks 15.503     High  
cufflinks 12.104     High  
cufflinks 39.371     High  
cufflinks 13.848     High  
cufflinks 15.236     High  
cufflinks 10.388     High  
cufflinks 13.291     High  
cufflinks 30.263     High  
cufflinks 18.527     High  
cufflinks 28.538     High  
cufflinks 1.269       Low
cufflinks 22.828     High  
cufflinks 10.131        
cufflinks 8.962        
cufflinks 21.397     High  
cufflinks 14.331     High  
cufflinks 12.42     High  
cufflinks 19.358     High  
cufflinks 39.958     High High
cufflinks 9.212     High  
cufflinks 34.582     High  
cufflinks 30.67     High  
cufflinks 19.475     High  

0 Strain