Gene : Bradi2g57730 B. distachyon v3.1
Defline:  (1 of 1) PTHR13343:SF18 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  6963
Name:  ? Bradi2g57730 Secondary Identifier:  ? PAC:32780845
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g57730 0.5kb upstream 0.5kb upstream 4645 true Bd2: 55614819-55619463 Brachypodium distachyon
Bradi2g57730 0.5kb upstream 0.5kb upstream 500 false Bd2: 55618964-55619463 Brachypodium distachyon
Bradi2g57730 0.5kb downstream 0.5kb downstream 4645 true Bd2: 55614319-55618963 Brachypodium distachyon
Bradi2g57730 0.5kb downstream 0.5kb downstream 500 false Bd2: 55614319-55614818 Brachypodium distachyon
Bradi2g57730 1.0kb upstream 1.0kb upstream 5145 true Bd2: 55614819-55619963 Brachypodium distachyon
Bradi2g57730 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55618964-55619963 Brachypodium distachyon
Bradi2g57730 1.0kb downstream 1.0kb downstream 5145 true Bd2: 55613819-55618963 Brachypodium distachyon
Bradi2g57730 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55613819-55614818 Brachypodium distachyon
Bradi2g57730 2.0kb upstream 2.0kb upstream 6145 true Bd2: 55614819-55620963 Brachypodium distachyon
Bradi2g57730 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55618964-55620963 Brachypodium distachyon
Bradi2g57730 2.0kb downstream 2.0kb downstream 6145 true Bd2: 55612819-55618963 Brachypodium distachyon
Bradi2g57730 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55612819-55614818 Brachypodium distachyon
Bradi2g57730 5.0kb upstream 5.0kb upstream 9145 true Bd2: 55614819-55623963 Brachypodium distachyon
Bradi2g57730 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55618964-55623963 Brachypodium distachyon
Bradi2g57730 5.0kb downstream 5.0kb downstream 9145 true Bd2: 55609819-55618963 Brachypodium distachyon
Bradi2g57730 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55609819-55614818 Brachypodium distachyon
Bradi2g57730 10.0kb upstream 10.0kb upstream 14145 true Bd2: 55614819-55628963 Brachypodium distachyon
Bradi2g57730 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55618964-55628963 Brachypodium distachyon
Bradi2g57730 10.0kb downstream 10.0kb downstream 14145 true Bd2: 55604819-55618963 Brachypodium distachyon
Bradi2g57730 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55604819-55614818 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568249 5269 Grass View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.507        
cufflinks 5.692        
cufflinks 5.306        
cufflinks 5.93        
cufflinks 1.851        
cufflinks 6.273        
cufflinks 5.237        
cufflinks 3.958        
cufflinks 5.275        
cufflinks 3.495        
cufflinks 1.234       Low
cufflinks 7.096       High
cufflinks 12.102     High High
cufflinks 3.71        
cufflinks 4.824        
cufflinks 6.663       High
cufflinks 4.371        
cufflinks 1.707        
cufflinks 1.306       Low
cufflinks 0.358       Low
cufflinks 1.717        
cufflinks 4.339        
cufflinks 3.902        
cufflinks 6.216        
cufflinks 6.542       High
cufflinks 5.29        
cufflinks 1.55        
cufflinks 3.883        
cufflinks 3.443        
cufflinks 2.107        

0 Strain