Gene : Bradi2g58200 B. distachyon v3.1
Defline:  (1 of 1) PTHR11203:SF2 - INTEGRATOR COMPLEX SUBUNIT 9 Genomic Order:  7029
Name:  ? Bradi2g58200 Secondary Identifier:  ? PAC:32780786
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g58200 0.5kb upstream 0.5kb upstream 6534 true Bd2: 55989606-55996139 Brachypodium distachyon
Bradi2g58200 0.5kb upstream 0.5kb upstream 500 false Bd2: 55989606-55990105 Brachypodium distachyon
Bradi2g58200 0.5kb downstream 0.5kb downstream 6534 true Bd2: 55990106-55996639 Brachypodium distachyon
Bradi2g58200 0.5kb downstream 0.5kb downstream 500 false Bd2: 55996140-55996639 Brachypodium distachyon
Bradi2g58200 1.0kb upstream 1.0kb upstream 7034 true Bd2: 55989106-55996139 Brachypodium distachyon
Bradi2g58200 1.0kb upstream 1.0kb upstream 1000 false Bd2: 55989106-55990105 Brachypodium distachyon
Bradi2g58200 1.0kb downstream 1.0kb downstream 7034 true Bd2: 55990106-55997139 Brachypodium distachyon
Bradi2g58200 1.0kb downstream 1.0kb downstream 1000 false Bd2: 55996140-55997139 Brachypodium distachyon
Bradi2g58200 2.0kb upstream 2.0kb upstream 8034 true Bd2: 55988106-55996139 Brachypodium distachyon
Bradi2g58200 2.0kb upstream 2.0kb upstream 2000 false Bd2: 55988106-55990105 Brachypodium distachyon
Bradi2g58200 2.0kb downstream 2.0kb downstream 8034 true Bd2: 55990106-55998139 Brachypodium distachyon
Bradi2g58200 2.0kb downstream 2.0kb downstream 2000 false Bd2: 55996140-55998139 Brachypodium distachyon
Bradi2g58200 5.0kb upstream 5.0kb upstream 11034 true Bd2: 55985106-55996139 Brachypodium distachyon
Bradi2g58200 5.0kb upstream 5.0kb upstream 5000 false Bd2: 55985106-55990105 Brachypodium distachyon
Bradi2g58200 5.0kb downstream 5.0kb downstream 11034 true Bd2: 55990106-56001139 Brachypodium distachyon
Bradi2g58200 5.0kb downstream 5.0kb downstream 5000 false Bd2: 55996140-56001139 Brachypodium distachyon
Bradi2g58200 10.0kb upstream 10.0kb upstream 16034 true Bd2: 55980106-55996139 Brachypodium distachyon
Bradi2g58200 10.0kb upstream 10.0kb upstream 10000 false Bd2: 55980106-55990105 Brachypodium distachyon
Bradi2g58200 10.0kb downstream 10.0kb downstream 16034 true Bd2: 55990106-56006139 Brachypodium distachyon
Bradi2g58200 10.0kb downstream 10.0kb downstream 10000 false Bd2: 55996140-56006139 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587867 5269 Grass View MSA
122041612 5273 Angiosperm View MSA
121343816 5274 Embryophyte View MSA
123379922 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.085        
cufflinks 1.662        
cufflinks 1.995       High
cufflinks 2.051       High
cufflinks 0.815       Low
cufflinks 1.478        
cufflinks 1.448        
cufflinks 1.393        
cufflinks 1.337        
cufflinks 1.04        
cufflinks 1.7        
cufflinks 1.214        
cufflinks 0.926        
cufflinks 1.248        
cufflinks 0.816       Low
cufflinks 1.409        
cufflinks 1.03        
cufflinks 2.076       High
cufflinks 1.289        
cufflinks 0.741       Low
cufflinks 1.118        
cufflinks 1.216        
cufflinks 1.35        
cufflinks 1.389        
cufflinks 1.612        
cufflinks 1.903       High
cufflinks 1.376        
cufflinks 1.439        
cufflinks 1.082        
cufflinks 1.245        

0 Strain