Gene : Bradi2g58500 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  7064
Name:  ? Bradi2g58500 Secondary Identifier:  ? PAC:32770828
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g58500 0.5kb upstream 0.5kb upstream 3229 true Bd2: 56161119-56164347 Brachypodium distachyon
Bradi2g58500 0.5kb upstream 0.5kb upstream 500 false Bd2: 56161119-56161618 Brachypodium distachyon
Bradi2g58500 0.5kb downstream 0.5kb downstream 3229 true Bd2: 56161619-56164847 Brachypodium distachyon
Bradi2g58500 0.5kb downstream 0.5kb downstream 500 false Bd2: 56164348-56164847 Brachypodium distachyon
Bradi2g58500 1.0kb upstream 1.0kb upstream 3729 true Bd2: 56160619-56164347 Brachypodium distachyon
Bradi2g58500 1.0kb upstream 1.0kb upstream 1000 false Bd2: 56160619-56161618 Brachypodium distachyon
Bradi2g58500 1.0kb downstream 1.0kb downstream 3729 true Bd2: 56161619-56165347 Brachypodium distachyon
Bradi2g58500 1.0kb downstream 1.0kb downstream 1000 false Bd2: 56164348-56165347 Brachypodium distachyon
Bradi2g58500 2.0kb upstream 2.0kb upstream 4729 true Bd2: 56159619-56164347 Brachypodium distachyon
Bradi2g58500 2.0kb upstream 2.0kb upstream 2000 false Bd2: 56159619-56161618 Brachypodium distachyon
Bradi2g58500 2.0kb downstream 2.0kb downstream 4729 true Bd2: 56161619-56166347 Brachypodium distachyon
Bradi2g58500 2.0kb downstream 2.0kb downstream 2000 false Bd2: 56164348-56166347 Brachypodium distachyon
Bradi2g58500 5.0kb upstream 5.0kb upstream 7729 true Bd2: 56156619-56164347 Brachypodium distachyon
Bradi2g58500 5.0kb upstream 5.0kb upstream 5000 false Bd2: 56156619-56161618 Brachypodium distachyon
Bradi2g58500 5.0kb downstream 5.0kb downstream 7729 true Bd2: 56161619-56169347 Brachypodium distachyon
Bradi2g58500 5.0kb downstream 5.0kb downstream 5000 false Bd2: 56164348-56169347 Brachypodium distachyon
Bradi2g58500 10.0kb upstream 10.0kb upstream 12729 true Bd2: 56151619-56164347 Brachypodium distachyon
Bradi2g58500 10.0kb upstream 10.0kb upstream 10000 false Bd2: 56151619-56161618 Brachypodium distachyon
Bradi2g58500 10.0kb downstream 10.0kb downstream 12729 true Bd2: 56161619-56174347 Brachypodium distachyon
Bradi2g58500 10.0kb downstream 10.0kb downstream 10000 false Bd2: 56164348-56174347 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582189 5269 Grass View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.124        
cufflinks 3.339       High
cufflinks 3.865       High
cufflinks 2.601        
cufflinks 0.991       Low
cufflinks 2.44        
cufflinks 2.503        
cufflinks 1.698        
cufflinks 2.04        
cufflinks 2.236        
cufflinks 1.499        
cufflinks 2.352        
cufflinks 0.998       Low
cufflinks 1.06       Low
cufflinks 0.98       Low
cufflinks 1.907        
cufflinks 0.98       Low
cufflinks 2.714        
cufflinks 1.998        
cufflinks 0.622       Low
cufflinks 1.831        
cufflinks 2.594        
cufflinks 1.658        
cufflinks 1.767        
cufflinks 2.193        
cufflinks 3.502       High
cufflinks 1.375        
cufflinks 2.851        
cufflinks 2.939        
cufflinks 2.652        

0 Strain