Gene : Bradi2g55180 B. distachyon v3.1
Defline:  (1 of 4) K00967 - ethanolamine-phosphate cytidylyltransferase (PCYT2) Genomic Order:  6641
Name:  ? Bradi2g55180 Secondary Identifier:  ? PAC:32775032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY4FS-6 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g55180 0.5kb upstream 0.5kb upstream 5534 true Bd2: 53648806-53654339 Brachypodium distachyon
Bradi2g55180 0.5kb upstream 0.5kb upstream 500 false Bd2: 53653840-53654339 Brachypodium distachyon
Bradi2g55180 0.5kb downstream 0.5kb downstream 5534 true Bd2: 53648306-53653839 Brachypodium distachyon
Bradi2g55180 0.5kb downstream 0.5kb downstream 500 false Bd2: 53648306-53648805 Brachypodium distachyon
Bradi2g55180 1.0kb upstream 1.0kb upstream 6034 true Bd2: 53648806-53654839 Brachypodium distachyon
Bradi2g55180 1.0kb upstream 1.0kb upstream 1000 false Bd2: 53653840-53654839 Brachypodium distachyon
Bradi2g55180 1.0kb downstream 1.0kb downstream 6034 true Bd2: 53647806-53653839 Brachypodium distachyon
Bradi2g55180 1.0kb downstream 1.0kb downstream 1000 false Bd2: 53647806-53648805 Brachypodium distachyon
Bradi2g55180 2.0kb upstream 2.0kb upstream 7034 true Bd2: 53648806-53655839 Brachypodium distachyon
Bradi2g55180 2.0kb upstream 2.0kb upstream 2000 false Bd2: 53653840-53655839 Brachypodium distachyon
Bradi2g55180 2.0kb downstream 2.0kb downstream 7034 true Bd2: 53646806-53653839 Brachypodium distachyon
Bradi2g55180 2.0kb downstream 2.0kb downstream 2000 false Bd2: 53646806-53648805 Brachypodium distachyon
Bradi2g55180 5.0kb upstream 5.0kb upstream 10034 true Bd2: 53648806-53658839 Brachypodium distachyon
Bradi2g55180 5.0kb upstream 5.0kb upstream 5000 false Bd2: 53653840-53658839 Brachypodium distachyon
Bradi2g55180 5.0kb downstream 5.0kb downstream 10034 true Bd2: 53643806-53653839 Brachypodium distachyon
Bradi2g55180 5.0kb downstream 5.0kb downstream 5000 false Bd2: 53643806-53648805 Brachypodium distachyon
Bradi2g55180 10.0kb upstream 10.0kb upstream 15034 true Bd2: 53648806-53663839 Brachypodium distachyon
Bradi2g55180 10.0kb upstream 10.0kb upstream 10000 false Bd2: 53653840-53663839 Brachypodium distachyon
Bradi2g55180 10.0kb downstream 10.0kb downstream 15034 true Bd2: 53638806-53653839 Brachypodium distachyon
Bradi2g55180 10.0kb downstream 10.0kb downstream 10000 false Bd2: 53638806-53648805 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568937 5269 Grass View MSA
122041937 5273 Angiosperm View MSA
121349404 5274 Embryophyte View MSA
123426391 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.892        
cufflinks 3.736        
cufflinks 5.478        
cufflinks 3.925        
cufflinks 3.798        
cufflinks 4.331        
cufflinks 3.267       Low
cufflinks 5.641        
cufflinks 5.395        
cufflinks 6.937        
cufflinks 7.946       High
cufflinks 8.047       High
cufflinks 6.971        
cufflinks 7.403       High
cufflinks 7.152        
cufflinks 5.195        
cufflinks 4.22        
cufflinks 6.644        
cufflinks 4.658        
cufflinks 2.479       Low
cufflinks 5.292        
cufflinks 9.978       High
cufflinks 5.288        
cufflinks 5.512        
cufflinks 3.977        
cufflinks 6.199        
cufflinks 10.055     High High
cufflinks 6.487        
cufflinks 7.697       High
cufflinks 5.659        

0 Strain