Gene : Bradi2g55477 B. distachyon v3.1
Defline:  (1 of 1) PTHR15052:SF2 - GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 2 Genomic Order:  6679
Name:  ? Bradi2g55477 Secondary Identifier:  ? PAC:32776554
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g55477 0.5kb upstream 0.5kb upstream 9818 true Bd2: 53876392-53886209 Brachypodium distachyon
Bradi2g55477 0.5kb upstream 0.5kb upstream 500 false Bd2: 53885710-53886209 Brachypodium distachyon
Bradi2g55477 0.5kb downstream 0.5kb downstream 9818 true Bd2: 53875892-53885709 Brachypodium distachyon
Bradi2g55477 0.5kb downstream 0.5kb downstream 500 false Bd2: 53875892-53876391 Brachypodium distachyon
Bradi2g55477 1.0kb upstream 1.0kb upstream 10318 true Bd2: 53876392-53886709 Brachypodium distachyon
Bradi2g55477 1.0kb upstream 1.0kb upstream 1000 false Bd2: 53885710-53886709 Brachypodium distachyon
Bradi2g55477 1.0kb downstream 1.0kb downstream 10318 true Bd2: 53875392-53885709 Brachypodium distachyon
Bradi2g55477 1.0kb downstream 1.0kb downstream 1000 false Bd2: 53875392-53876391 Brachypodium distachyon
Bradi2g55477 2.0kb upstream 2.0kb upstream 11318 true Bd2: 53876392-53887709 Brachypodium distachyon
Bradi2g55477 2.0kb upstream 2.0kb upstream 2000 false Bd2: 53885710-53887709 Brachypodium distachyon
Bradi2g55477 2.0kb downstream 2.0kb downstream 11318 true Bd2: 53874392-53885709 Brachypodium distachyon
Bradi2g55477 2.0kb downstream 2.0kb downstream 2000 false Bd2: 53874392-53876391 Brachypodium distachyon
Bradi2g55477 5.0kb upstream 5.0kb upstream 14318 true Bd2: 53876392-53890709 Brachypodium distachyon
Bradi2g55477 5.0kb upstream 5.0kb upstream 5000 false Bd2: 53885710-53890709 Brachypodium distachyon
Bradi2g55477 5.0kb downstream 5.0kb downstream 14318 true Bd2: 53871392-53885709 Brachypodium distachyon
Bradi2g55477 5.0kb downstream 5.0kb downstream 5000 false Bd2: 53871392-53876391 Brachypodium distachyon
Bradi2g55477 10.0kb upstream 10.0kb upstream 19318 true Bd2: 53876392-53895709 Brachypodium distachyon
Bradi2g55477 10.0kb upstream 10.0kb upstream 10000 false Bd2: 53885710-53895709 Brachypodium distachyon
Bradi2g55477 10.0kb downstream 10.0kb downstream 19318 true Bd2: 53866392-53885709 Brachypodium distachyon
Bradi2g55477 10.0kb downstream 10.0kb downstream 10000 false Bd2: 53866392-53876391 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026858 5273 Angiosperm View MSA
124586125 5269 Grass View MSA
121347438 5274 Embryophyte View MSA
123380552 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.493       Low
cufflinks 1.249        
cufflinks 1.79       High
cufflinks 0.955        
cufflinks 0.471       Low
cufflinks 1.055        
cufflinks 1.02        
cufflinks 0.974        
cufflinks 1.086        
cufflinks 1.197        
cufflinks 1.126        
cufflinks 1.071        
cufflinks 0.831        
cufflinks 0.639        
cufflinks 0.491       Low
cufflinks 0.949        
cufflinks 0.497       Low
cufflinks 1.507        
cufflinks 1.262        
cufflinks 0.96        
cufflinks 0.914        
cufflinks 2.202       High
cufflinks 0.972        
cufflinks 0.87        
cufflinks 0.85        
cufflinks 1.551        
cufflinks 1.17        
cufflinks 1.754       High
cufflinks 1.831       High
cufflinks 1.094        

0 Strain